1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAGTGCACGGCGGAACCTTCAGGGTTACGAGATCAATGGTCGTCAGTTACGGGTTGATTTTGCTGAAAATGGGAGGAACACTGACAGAAATAGAGAAAAGgtcgacgatcctcaaatttttactgtagaagagcctttcctaccacctttggagttctctgttaatctgagaagttgtattgtcttcgttctgtgaatga...
species | Zea mays |
transcript | GRMZM2G174919_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGGTTGATTTTGCTGAAAATGGGAGGAACACTGACAGAAATAGAGAAAAG GGTCGTGGAGGGCCAGGGATGACATCTAATGTTGEST: gi|78080564|gb|DV508976.1|DV508976
genomic: GGGTTGATTTTGCTGAAAATGGGAGGAACACTGACAGAAATAGAGAAAAGgtcgacgatc ... tgcattgcagGGTCGTGGAGGGCCAGGGATGACATCTAATGTTG
EST: GGGTTGATTTTGCTGAAAATGGGAGGAACACTGACAGAAATAGAGAAAAG GGTCGTGGAGGGCCAGGGATGACATCTAATGTTGEST: gi|89758082|gb|DY687419.1|DY687419
genomic: GGGTTGATTTTGCTGAAAATGGGAGGAACACTGACAGAAATAGAGAAAAGgtcgacgatc ... tgcattgcagGGTCGTGGAGGGCCAGGGATGACATCTAATGTTG
EST: GGGTTGATTTTGCTGAAAATGGGAGGAACACTGACAGAAATAGAGAAAAG GGTCGTGGAGGGCCAGGGATGACATCTAATGTTG
genomic: GGGTTGATTTTGCTGAAAATGGGAGGAACACTGACAGAAATAGAGAAAAGgtcgacgatc ... tgcattgcagGGTCGTGGAGGGCCAGGGATGACATCTAATGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTGCACGGCGGAACCTTCAGGGTTACGAGATCAATGGTCGTCAGTTACGGGTTGATTTTGCTGAAAATGGGAGGAACACTGACAGAAATAGAGAAAAGgtcgacgatcctcaaatttttactgtagaagagcctttcctaccacctttggagttctctgttaatctgagaagttgtattgtcttcgttctgtgaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctaccac