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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTTTATGGGCTCCTTAGAAGTTCCAGCCCAGGCATCTGAAACTATTAAAGTTCCAACTGCACATTATGAATTTGGCGCCAATTTTTTAGATCCAAAGgtttgtttccatgccatcaattgttattgtggaatcttccataatggtgtatttcttaactcgtttgcttctttgcatgaaactgcatgtag

Basic information

species Zea mays
transcript GRMZM2G174696_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174696_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g20750.1 (Oryza sativa), 5'ss of exon 3
CATTTTTATGGGCTCCTTAGAAGTTCCAGCCCAGGCATCTGAAACTATTAAAGTTCCAACTGCACATTATGAATTTGGCGCCAATTTTTTAGATCCAAAGgtttgtttccatgccatcaattgttattgtggaatcttccataatggtgtatttcttaactcgtttgcttctttgcatgaaactgcatgtag
  |||||||||| ||||||||||||||| | ||| || |||||||||| |||||||||||  ||||||| ||||| || ||||||||| ||||||||||||||||| |  |||  ||  | | ||||    |||| ||    | | ||||||||  ||||| ||     | ||   ||| || ||  |  ||
TGTTTTTATGGGTTCCTTAGAAGTTCCATCTCAGTCAACTGAAACTATAAAAGTTCCAACATCACATTACGAATTCGGTGCCAATTTTATAGATCCAAAGgtttgtctgtatggaattgaatattat----gaattttttgca-tagtgtattttgtaacttgtga---ttttgaaatggaattgtctacag

upper sequence: GRMZM2G174696_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv03s0097g00590.t01 (Vitis vinifera), 5'ss of exon 3
CATTTTTATGGGCTCCTTAGAAGTTCCAGCCCAGGCATCTGAAACTATTAAAGTTCCAACTGCACATTATGAATTTGGCGCCAATTTTTTAGATCCAAAGgtttgtttccatgccatcaattgttattgtgg--aatcttccat-aatggtgtatttcttaactcgtttgcttctttgcatga-aactgcatgtag-------------------------
| | || |||||  ||   ||| ||||  | ||  | ||||||||||||||| | |||||||| |||||||| |||||||| || ||| |||| ||||||||  |  |   |      | ||  | || |||  ||| |   ||   | ||||  |    |||| ||||| ||   || |||   | || | | |                          
CGTGTTCATGGGGCCCACTGAAATTCCTTCTCAATCCTCTGAAACTATTAAAATCCCAACTGCTCATTATGAGTTTGGCGCTAACTTTATAGACCCAAAGgtaggcctaatttttcagatttacttttatgggaaatatcttattggtagtgtgatgtgcaactagtttgttttcatgaatgttgaatgaaagcattggagcatttttggttgcttaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31353843|gb|CD438200.1|CD438200
EST:     AAGTTCCAACTGCACATTATGAATTTGGCGCCAATTTTTTAGATCCAAAG                         TTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCTTAATGCTCGTGTG
genomic: AAGTTCCAACTGCACATTATGAATTTGGCGCCAATTTTTTAGATCCAAAGgtttgtttcc ... ctgcatgtagTTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCTTAATGCTCGTGTG
EST: gi|51593036|gb|CV072182.1|CV072182
EST:     AAGTTCCAACTGCACATTATGAATTTGGCGCCAATTTTTTAGATCCAAAG                         TTAATGCTCATTGGAAGGGTGATGACAGATGGAAGACTTAATGCTCGTGTG
genomic: AAGTTCCAACTGCACATTATGAATTTGGCGCCAATTTTTTAGATCCAAAGgtttgtttcc ... ctgcatgtagTTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCTTAATGCTCGTGTG
EST: gi|148944949|gb|EC890114.2|EC890114
EST:     AAGTTCCAACTGCACATTATGAATTTGGCGCCAATTTTTTAGATCCAAAG                         TTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCTTAATGCTCGTGTG
genomic: AAGTTCCAACTGCACATTATGAATTTGGCGCCAATTTTTTAGATCCAAAGgtttgtttcc ... ctgcatgtagTTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCTTAATGCTCGTGTG
EST: gi|71428447|gb|DR809497.1|DR809497
EST:     AAGTTCCAACTGCACATTATGAATTTGGCGCCAATTTTTTAGATCCAAAG                         TTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCTTAATGCTCGTGTG
genomic: AAGTTCCAACTGCACATTATGAATTTGGCGCCAATTTTTTAGATCCAAAGgtttgtttcc ... ctgcatgtagTTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCTTAATGCTCGTGTG
EST: gi|76294141|gb|DV033709.1|DV033709
EST:     AAGTTCCAACTGCACATTATGAATTTGGCGCCAATTTTTTAGATCCAAAG                         TTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCTTAATGCTCGTGTG
genomic: AAGTTCCAACTGCACATTATGAATTTGGCGCCAATTTTTTAGATCCAAAGgtttgtttcc ... ctgcatgtagTTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCTTAATGCTCGTGTG
EST: gi|211089744|gb|FL262762.1|FL262762
EST:     AAGTTCCAACTGCACATTATGAATTTGGCGCCAATTTTTTAGATCCAAAG                         TTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCTTAATGCTCGTGTG
genomic: AAGTTCCAACTGCACATTATGAATTTGGCGCCAATTTTTTAGATCCAAAGgtttgtttcc ... ctgcatgtagTTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCTTAATGCTCGTGTG
EST: gi|148937183|gb|EC881364.2|EC881364
EST:     AAGTTCCAACTGCACATTATGAATTTGGCGCCAATTTTTTAGATCCAAAG                         TTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCTTAATGCTCGTGTG
genomic: AAGTTCCAACTGCACATTATGAATTTGGCGCCAATTTTTTAGATCCAAAGgtttgtttcc ... ctgcatgtagTTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCTTAATGCTCGTGTG
EST: gi|5268993|gb|AI770957.1|AI770957
EST:     AAGTTCCAACTGCACATTATGAATTTGGCGCCAATTTTTTAGATCCAAAG                         TTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCTTAATGCTCGTGTG
genomic: AAGTTCCAACTGCACATTATGAATTTGGCGCCAATTTTTTAGATCCAAAGgtttgtttcc ... ctgcatgtagTTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCTTAATGCTCGTGTG
EST: gi|149090165|gb|EE179465.2|EE179465
EST:     AAGTTCCAACTGCACATTATGAATTTGGCGCCAATTTTTTAGATCCAAAG                         TTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCTTAATGCTCGTGTG
genomic: AAGTTCCAACTGCACATTATGAATTTGGCGCCAATTTTTTAGATCCAAAGgtttgtttcc ... ctgcatgtagTTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCTTAATGCTCGTGTG
EST: gi|89762284|gb|DY689955.1|DY689955
EST:     AAGTTCCAACTGCACATTATGAATTTGGCGCCAATTTTTTAGATCCAAAG                         TTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCTTAATGCTCGTGTG
genomic: AAGTTCCAACTGCACATTATGAATTTGGCGCCAATTTTTTAGATCCAAAGgtttgtttcc ... ctgcatgtagTTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCTTAATGCTCGTGTG