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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCAATTGATCAGAATCGAGTGCAGGGTGCCAGAGTATGGGTGGACGACGCAGAAAGTGTTCCATTTCCTAAACTTCCTCGTGAACGGCGgtgagccaagcatttgtgtcgcttgcattgcttttcttgtgctgggtgtttgatttggttgactgatcgatgtgaatgctccattcctgctttcag

Basic information

species Zea mays
transcript GRMZM2G174286_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174286_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os10g39220.1 (Oryza sativa), 5'ss of exon 2
GTCCAATTGATCAGAATCGAGTGCAGGGTGCCAGAGTATGGGTGGACGACGCAGAAAGTGTTCCATTTCCTAAACTTCCTCGTGAACGGCGgtgagc--caagcatttgtgtcgcttgcattgcttttctt--gtgctgggtgtt-tgatttggttgactgatcgatgtgaatgct--ccattcctgctttcag
|||||||||||||||||||| || |||||||| || || |||||||| || || || |||||||||||||| |||||||||||||||||||||| |   | |||  || | |   || | |||| | | ||   || | ||| |  |  | | || || ||||| |||  ||||||     ||  || || |||
GTCCAATTGATCAGAATCGAATGTAGGGTGCCCGAATACGGGTGGACAACACAAAAGGTGTTCCATTTCCTCAACTTCCTCGTGAACGGCGgtgggtaacgagctgttttttttttttctttgcctatgttagatgttcggtctggtactcttgtcgattgatctatgacaatgcttgttgtttgtgtttgcag

upper sequence: GRMZM2G174286_T03 (Zea mays), 5'ss of exon 3
lower sequence: EFJ15891 (Selaginella moellendorffii), 5'ss of exon 2
GTCCAATTGATCAGAATCGAGTGCAGGGTGCCAGAGTATGGGTGGACGACGCAGAAAGTGTTCCATTTCCTAAACTTCCTCGTGAACGGCGgtgagccaagcatttgtgtcgcttgcattgcttttcttgtgctgggt-gtttgatttggttgactgatcgatgtgaatgctccattcctgctttcag
 ||||| |  | |||||  |   | ||||||| |||||||| ||||| |||||||||||||||||| |||| || ||| | || || || |||||   ||   ||  | |   || |  |  |  ||||||  ||  | || |  || | |                                     
ATCCAACTCGTTAGAATACAAATCCGGGTGCCGGAGTATGGCTGGACAACGCAGAAAGTGTTCCATCTCCTCAATTTCTTTGTAAATGGAGgtga---aaagtttcatatttttttctctcatcctcttgttttgattcgtcttcttcgatcag----------------------------------

upper sequence: GRMZM2G174286_T03 (Zea mays), 5'ss of exon 3
lower sequence: EFJ33253 (Selaginella moellendorffii), 5'ss of exon 2
GTCCAATTGATCAGAATCGAGTGCAGGGTGCCAGAGTATGGGTGGACGACGCAGAAAGTGTTCCATTTCCTAAACTTCCTCGTGAACGGCGgtgagccaagcatttgtgtcgcttgcattgcttttcttgtgctgggtgtttgatttggttgactgatcgatgtgaatgctccattcctgctttcag
 ||||| |  | |||||  |   | ||||||| |||||||| ||||| |||||||||||||||||| |||| || ||| | || || || ||||    ||   |||   |   || |  |  |  ||||||  ||    || |  ||  | ||                                  
ATCCAACTCGTTAGAATACAAATCCGGGTGCCGGAGTATGGCTGGACAACGCAGAAAGTGTTCCATCTCCTCAATTTCTTTGTAAATGGAGgtg----aaaagtttcattttttttctctcatcctcttgttttga---ttcgtcttcctcgatcag------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67017793|gb|CO446542.1|CO446542
EST:     GTGGACGACGCAGAAAGTGTTCCATTTCCTAAACTTCCTCGTGAACGGCG                         TGAGGTCTGCCGTGTTCGTGCTGCGGCGGAATGTGCAACTCGTAGAGCCTG
genomic: GTGGACGACGCAGAAAGTGTTCCATTTCCTAAACTTCCTCGTGAACGGCGgtgagccaag ... ctgctttcagTGAGGTCTGCCGTGTTCGTGCTGCGGCGGAATGTGCAACTCGTAGAGCCTG