Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGATTCGGAACCATGGCAACAATCTGGCTATTTGGCAACTTTGCTCAGTCCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcctatgttagatgcaaccttatcttttttcttttgtgttgatttgatgcaaaatgctttatatatcaggagtgccctctgttttgaaatagg...

Basic information

species Zea mays
transcript GRMZM2G173874_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G173874_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g39110.1 (Oryza sativa), 5'ss of exon 3
TAGATTCGGAACCATGGCAACAATCTGGCTATTTGGCAACTTTGCTCAGTCCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcctatgttagatgcaaccttatc-ttttttcttttgtgttgatttgatgcaaaatgct--ttatatatcaggagtgccctctgttttgaaatagg
|||||| |||||||||||||||||||||||||||||||| ||||| || || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||  || |  ||    || || || | ||    ||| |    |   |||  || ||| ||  |  |     |  ||   || |   
TAGATTTGGAACCATGGCAACAATCTGGCTATTTGGCAATTTTGCGCAATCTTTCCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgctttctatgtcagacacacctgtaaaacttctttttatctgccatttttacattacgggctaattttatttctaggattaaaccaattaaaaatt---

upper sequence: GRMZM2G173874_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA03G07550.1 (Glycine max), 5'ss of exon 3
TAGATTCGGAACCATGGCAACAATCTGGCTATTTGGCAACTTTGCTCAGTCCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcctatgttagatgcaaccttatcttttttcttttgtgttgatttgatgcaaaatgctttatatatcaggagtgccctctgttttgaaatagg
||  ||  |||  || ||||  | ||||||  ||   || |||  ||| ||||| ||||||||||||||||| |||||||| || |||||||| || |||||  |       | |  | ||     |||| |   | ||||   | | ||  || |  |    |    | | |  |    |  |       ||     | 
TAAGTTTAGAAGTATTGCAAGCACCTGGCTTCTTACAAATTTTCTTCAATCCTTCCTACAAAGCTCTGGTGCTTTTGAAGTATATTGCAATGGCGACTTGgtgagtacttggtctgtgctggctagttatttacatactttctgggtcataggacgggaggatccccttcttttggtttggttcaagagaatgggcgggt

upper sequence: GRMZM2G173874_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv08s0105g00440.t01 (Vitis vinifera), 5'ss of exon 3
TAGATTCGGAACCATGGCAACAATCTGGCTATTTGGCAACTTTGCTCAGTCCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcctatgttagatgcaaccttatcttttttcttttgtgttgatttgatgcaaaatgct---ttatatatcaggagtgccctctgttttgaaatagg
||| || ||||||||  |||| |  |||||  |||| |||||   ||| ||||| |||||||| |||||||| |||||||| ||||||||||| || ||||||   | | ||| || | |  | |  | ||||||||||||| ||||  ||| ||  ||| |      |||    |||| || |  ||   |  | |   |  
TAGGTTTGGAACCATTTCAACCACTTGGCTTCTTGGAAACTTCCTTCAATCCTTCCTACAAAGTTCTGGTGCTTTTGAAGTGTACTGCAATGGTGAATTGgtaaagt-cttatctttgct-tagctatttcttttttctttt-tgttctttttatataaattaagaggttactactcagcagggtgctacttagtaaggaaaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32924191|gb|CF029003.1|CF029003
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32832562|gb|CD972240.1|CD972240
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32838739|gb|CD978420.1|CD978420
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32838239|gb|CD977917.1|CD977917
EST:     CCTTTCTACAAAGCTCTGGTTCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32924362|gb|CF029174.1|CF029174
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32924557|gb|CF029369.1|CF029369
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGGGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|33099892|gb|CF059852.1|CF059852
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|18164713|gb|BM334552.1|BM334552
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|211434400|gb|FL298796.1|FL298796
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|18173804|gb|BM349192.1|BM349192
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32839311|gb|CD978992.1|CD978992
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|74240662|gb|DT648576.1|DT648576
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|211121395|gb|FL463013.1|FL463013
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32847986|gb|CD987667.1|CD987667
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32924155|gb|CF028967.1|CF028967
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32838946|gb|CD978627.1|CD978627
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32832401|gb|CD972079.1|CD972079
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|93015524|gb|EB641044.1|EB641044
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTTTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32924602|gb|CF029414.1|CF029414
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32923716|gb|CF028528.1|CF028528
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|14208271|gb|BG841949.1|BG841949
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|18176273|gb|BM351287.1|BM351287
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32843768|gb|CD983449.1|CD983449
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAG-GGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|116819008|gb|EC862093.1|EC862093
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32924002|gb|CF028814.1|CF028814
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32923986|gb|CF028798.1|CF028798
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32836186|gb|CD975864.1|CD975864
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTCCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32847760|gb|CD987441.1|CD987441
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGTAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|17929683|gb|BM266643.1|BM266643
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32924582|gb|CF029394.1|CF029394
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32923903|gb|CF028715.1|CF028715
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|18165465|gb|BM335304.1|BM335304
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|78114145|gb|DV532534.1|DV532534
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32838813|gb|CD978494.1|CD978494
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|16920527|gb|BM074700.1|BM074700
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|22472749|gb|BU037229.1|BU037229
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|33100311|gb|CF060271.1|CF060271
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|74239236|gb|DT647150.1|DT647150
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32843660|gb|CD983341.1|CD983341
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32841846|gb|CD981527.1|CD981527
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|76018369|gb|DT945539.1|DT945539
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32923998|gb|CF028810.1|CF028810
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGCAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32832950|gb|CD972628.1|CD972628
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGGTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|9255115|gb|BE345583.1|BE345583
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32924398|gb|CF029210.1|CF029210
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32834772|gb|CD974450.1|CD974450
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32924499|gb|CF029311.1|CF029311
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32846030|gb|CD985711.1|CD985711
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|211434403|gb|FL298799.1|FL298799
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32833210|gb|CD972888.1|CD972888
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|149014933|gb|EE044663.2|EE044663
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32833564|gb|CD973242.1|CD973242
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|32923818|gb|CF028630.1|CF028630
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|71450214|gb|DR831264.1|DR831264
EST:     CCTTTCTACAAAGTTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTTTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
EST: gi|18173980|gb|BM349368.1|BM349368
EST:     CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTG                         GTATTCTCAGAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG
genomic: CCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 177

TAGATTCGGAACCATGGCAACAATCTGGCTATTTGGCAACTTTGCTCAGTCCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGGGACCTTGTTGGCAGCAGATTGCCTGGGTCTCCATTTGGGAGGAATCCGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 179

TAGATTCGGAACCATGGCAACAATCTGGCTATTTGGCAACTTTGCTCAGTCCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGGGACCTTGTTGGCAGCAGATTGCCTGGGTCTCCATTTGGGAGGAATCCGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 270

TAGATTCGGAACCATGGCAACAATCTGGCTATTTGGCAACTTTGCTCAGTCCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGGGACCTTGTTGGCAGCAGATTGCCTGGGTCTCCATTTGGGAGGAATCCGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 175

TAGATTCGGAACCATGGCAACAATCTGGCTATTTGGCAACTTTGCTCAGTCCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcc ... tacttttcagGTATTCTCAAAACTTGCTGAGCAGAGGTTCCCTAGCGAGTTCGAGTTGCGGGACCTTGTTGGCAGCAGATTGCCTGGGTCTCCATTTGGGAGGAATCCGG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAGATTCGGAACCATGGCAACAATCTGGCTATTTGGCAACTTTGCTCAGTCCTTTCTACAAAGCTCTGGTGCCTTTGAAGTTTACTGCAATGGAGATTTGgtatgcttcctatgttagatgcaaccttatcttttttcttttgtgttgatttgatgcaaaatgctttatatatcaggagtgccctctgttttgaaatagg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT