1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCAGCGTGAGTGAGGTCGAGGCGCTGTACGAGCTGTTTAAGAGGATCAGCAGCGCCGTCATTGATGATGGGCTGATTAACAAGgtcggcaatgggtgtctggttcactacttggttcttatgtaatctcttattaatctttgtggtatgtgcaagtgtggatggtcctgttagtatgcttgtgtgtgatggtcaatgctgagatggctgttcttgcttgtcacctctgcgcag
species | Zea mays |
transcript | GRMZM2G173424_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGGTTGATTAACAAG GAGGAATTTCAGTTGGCGGTATTTAAGACCAACAAGAAGGAGAGCCTGTTCEST: gi|60342172|gb|DN209145.1|DN209145
genomic: TGGGCTGATTAACAAGgtcggcaatg ... ctctgcgcagGAGGAATTTCAGTTGGCGCTATTTAAGACCAACAAGAAGGAGAGCCTGTTC
EST: TGTTTAAGAGGATCAGCAGCGCCGTCATTGATGATGGGCTGATTAACAAG GAGGAATTTCAGTTGGCGCTATTTAAGACCAACAAGAAGGAGAGCCTGTTC
genomic: TGTTTAAGAGGATCAGCAGCGCCGTCATTGATGATGGGCTGATTAACAAGgtcggcaatg ... ctctgcgcagGAGGAATTTCAGTTGGCGCTATTTAAGACCAACAAGAAGGAGAGCCTGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGCGTGAGTGAGGTCGAGGCGCTGTACGAGCTGTTTAAGAGGATCAGCAGCGCCGTCATTGATGATGGGCTGATTAACAAGgtcggcaatgggtgtctggttcactacttggttcttatgtaatctcttattaatctttgtggtatgtgcaagtgtggatggtcctgttagtatgcttgtgtgtgatggtcaatgctgagatggctgttcttgcttgtcacctctgcgcag
- - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT