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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAAGACTGGCTGGCGCTAGTTGCAGTCCACAGTGATTCCTGGTTACTGTCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttctgctatgattcaactatgcagttttcatacccaatcattgttgtttgttccttcctatgctggcatatttttatctgaattttgcatacc...

Basic information

species Zea mays
transcript GRMZM2G172001_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G172001_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g66420.1 (Oryza sativa), 5'ss of exon 3
AGAAAGACTGGCTGGCGCTAGTTGCAGTCCACAGTGATTCCTGGTTACTGTCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttctgctatgattcaactatgcagttttcatacccaat----cattgttgtttgttccttcctatgctggcatattt-ttatctgaattttgcatacc
||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||| || || ||||| |||||||||||| | |||||||| || | |    |   ||   |||||||||| ||  |||     |||   |||||  |    | | || ||||  |      |  |  | ||  |     
AGAAAGACTGGTTGGCGTTAGTCGCAGTTCACAGTGATTCCTGGTTACTGTCTGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAGgtaattttttttcgccaaaaaaatcctgcagttttcttagtcaaaatgacatgaatgttttctatggcttctggtggctgacccgccacatagagttgtc-----

upper sequence: GRMZM2G172001_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA07G40170.1 (Glycine max), 5'ss of exon 3
AGAAAGACTGGCTGGCGCTAGTTGCAGTCCACAGTGATTCCTGGTTACTGTCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttctgctatgattcaactatgcagttttcatacccaatcattgt-tgtttgttccttcctatgctggcatatttttatctgaattttgcatacc
|||| ||||||||  | || |||||||| |||||||| || ||| | ||  ||||||| ||||| |||||||| |||||||||||||  |   |    ||||||     ||| | |   | | |  ||     ||  |     ||  |||| | |||    | | ||       |    ||  ||||     ||  ||   
AGAAGGACTGGCTATCACTGGTTGCAGTTCACAGTGACTCATGGCTGCTTGCTGTTGCTTTCTATTTTGGTGCCCGCTTTGGATTTGGTAAGAATGAAAGgtaagaaccctgttctctattagccttgtgaaattgttttattattcttgtatatttagaacattcttcctaaactctcttccatcttgtccttttattt-

upper sequence: GRMZM2G172001_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA17G00630.1 (Glycine max), 5'ss of exon 3
AGAAAGACTGGCTGGCGCTAGTTGCAGTCCACAGTGATTCCTGGTTACTGTCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttctgctatg-attcaac-tatgca---gttttcatacccaatcattgttgtttgttccttcctatgctggcatatttttatctgaattttgcatacc
|||| ||||||||  | || |||||||| |||||||| || ||| | ||  ||||||| ||||| |||||||| |||||||||||||  |   |    ||||||   | ||| | |  |||  ||  |||||   | |||||| |  | | |   || |    |  ||    |  |    ||| ||||   ||| ||| | ||| 
AGAAGGACTGGCTATCACTGGTTGCAGTTCACAGTGACTCATGGCTGCTTGCTGTTGCTTTCTATTTTGGTGCCCGCTTTGGATTTGGTAAGAATGAAAGgtaagaatcctgttctccattatacacatgcaaaagatttcattctta-ttagccttatgaaattgttttattattcttgtatattta---gaacttt-cttact

upper sequence: GRMZM2G172001_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT1G14510.1 (Arabidopsis thaliana), 5'ss of exon 3
AGAAAGACTGGCTGGCGCTAGTTGCAGTCCACAGTGATTCCTGGTTACTGTCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttctgctatgattcaactatgcagttttcatacccaatcattgttgtttgttccttcctatgctggcatattt-ttatctgaattttgcatacc-
| ||||||||| |  |  | |||||||| ||||||||||| ||| |  | ||||||||||| |||||||||||||| || ||||||| ||   |    |||||| | |  | || || |   | | | | || ||  |      |  |||||   |    ||||     || | ||| |   |   | | | | |||| |  
AAAAAGACTGGATTTCTTTGGTTGCAGTTCACAGTGATTCATGGCTTATCTCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTTGGCAAGAATGAGAGgtaagtttctttctctgctc--agtgttctgtgtttgttaattttgcttgtttggtaaagcttcaatgactagtatagtagctgcataattctagcatccaa

upper sequence: GRMZM2G172001_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT2G02470.1 (Arabidopsis thaliana), 5'ss of exon 3
AGAAAGACTGGCTGGCGCTAGTTGCAGTCCACAGTGATTCCTGGTTACTGTCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttctgctatgattcaac--tatgcagttttcatacccaatcattgttgt-ttgttccttcctatgc-tggcatatttttatctgaattttgcatacc
| || |||||| |  |  | || ||||| ||||||||||| ||| | || ||||||||||| |||||||||||||| || ||||||| ||   |    ||||||   | || ||     |||    | |  ||| ||    | |||| ||     | |||    | |  |||  ||| |   || ||  |||   ||  |    
AAAAGGACTGGGTATCTTTGGTCGCAGTTCACAGTGATTCATGGCTGCTTTCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTTGGCAAGAATGAGAGgtaagggtccttctcaagctcagtgtttttgagtgttgcatctcaattatgacaatattgggtgtactcatgtgtggtaaggttataa-tgatcattctag---

upper sequence: GRMZM2G172001_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv12s0035g01980.t01 (Vitis vinifera), 5'ss of exon 3
AGAAAGACTGGCTGGCGCTAGTTGCAGTCCACAGTGATTCCTGGTTACTGTCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttct----gctatgattcaactatgcagttttc----atacccaatcattgttgtttgttccttcct-atgctggcatatttttatctgaattttgcatacc
||||||||||| |  | || ||||| || ||||||||||| ||||| ||  ||||||||||||| |||||||| |||||||| ||||  |        ||||||  ||| |     ||    |  |||| | | || ||     ||  | |||      ||||| ||  |   | ||| |||   | | |   |  | || |       
AGAAAGACTGGTTATCACTGGTTGCTGTGCACAGTGATTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCCCGCTTTGGGTTTGGTAAGAGTGAAAGgtaacactttttggaacttcactgaaactttcctgtctttctcaatgtcaaatttcaaatgtttttttgtgagtcatggtggtgaagtatctcc--agttct-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60397867|gb|DN230683.1|DN230683
EST:     TCTGTTGCATTCTACTTTGGTGCACGGTTTGGATTTGACAGAGAAACTAG                         GAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
genomic: TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttc ... tgtaatgcagGAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
EST: gi|211502673|gb|FL086824.1|FL086824
EST:     TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAG                         GAGGCGACTCTTTAGCCTGAT
genomic: TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttc ... tgtaatgcagGAGGCGACTCTTTAGCCTGAT
EST: gi|149042113|gb|EE047091.2|EE047091
EST:     TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAG                         GAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
genomic: TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttc ... tgtaatgcagGAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
EST: gi|211505027|gb|FL086835.1|FL086835
EST:     TCTGTTGCATTCTACKTTGGTGCACGCTTTGGATTTGACAGAGAAACTAG                         GAGGCGACTCTT
genomic: TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttc ... tgtaatgcagGAGGCGACTCTT
EST: gi|76921025|gb|DV168421.1|DV168421
EST:     TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAG                         GAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
genomic: TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttc ... tgtaatgcagGAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
EST: gi|78077036|gb|DV505470.1|DV505470
EST:     TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAG                         GAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
genomic: TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttc ... tgtaatgcagGAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
EST: gi|71436584|gb|DR817634.1|DR817634
EST:     TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAG                         GAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
genomic: TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttc ... tgtaatgcagGAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
EST: gi|22935540|gb|BU571815.1|BU571815
EST:     TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAG                         GAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
genomic: TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttc ... tgtaatgcagGAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
EST: gi|211166632|gb|FK973167.1|FK973167
EST:     TTTGGTGCACGGTTTGGATTTGACAGAGAAACTAG                         GAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
genomic: TTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttc ... tgtaatgcagGAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
EST: gi|71426022|gb|DR807072.1|DR807072
EST:     TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAG                         GAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
genomic: TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttc ... tgtaatgcagGAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
EST: gi|26560007|gb|CA832242.1|CA832242
EST:     TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAG                         GAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
genomic: TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttc ... tgtaatgcagGAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
EST: gi|211507394|gb|FL086856.1|FL086856
EST:     TCTGTTGCATTCTACTTTGGTGCACGGTTTGGATTTGACAGAGAAACTAG                         GAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATT
genomic: TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttc ... tgtaatgcagGAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATT
EST: gi|87157435|gb|DY402224.1|DY402224
EST:     TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAG                         GAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
genomic: TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttc ... tgtaatgcagGAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
EST: gi|78110540|gb|DV528950.1|DV528950
EST:     TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAG                         GAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
genomic: TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttc ... tgtaatgcagGAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
EST: gi|74241423|gb|DT649337.1|DT649337
EST:     TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAG                         GAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
genomic: TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttc ... tgtaatgcagGAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
EST: gi|71438530|gb|DR819580.1|DR819580
EST:     TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAG                         GAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
genomic: TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttc ... tgtaatgcagGAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
EST: gi|78110698|gb|DV529096.1|DV529096
EST:     TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAG                         GAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
genomic: TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttc ... tgtaatgcagGAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
EST: gi|71435348|gb|DR816398.1|DR816398
EST:     TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAG                         GAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
genomic: TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttc ... tgtaatgcagGAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
EST: gi|149108563|gb|EE292842.2|EE292842
EST:     TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAG                         GAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
genomic: TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttc ... tgtaatgcagGAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
EST: gi|74237049|gb|DT644963.1|DT644963
EST:     ACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAG                         GAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
genomic: ACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttc ... tgtaatgcagGAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
EST: gi|94480407|gb|EB709365.1|EB709365
EST:     TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAG                         GAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
genomic: TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttc ... tgtaatgcagGAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
EST: gi|74243375|gb|DT651289.1|DT651289
EST:     TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAG                         GAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
genomic: TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttc ... tgtaatgcagGAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
EST: gi|74237050|gb|DT644964.1|DT644964
EST:     TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAG                         GAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
genomic: TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttc ... tgtaatgcagGAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
EST: gi|15177432|gb|BI398386.1|BI398386
EST:     TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAG                         GAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAG
genomic: TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttc ... tgtaatgcagGAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAG
EST: gi|5555374|gb|AI881325.1|AI881325
EST:     TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAG                         GAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT
genomic: TCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGACAGAGAAACTAGgtaattcttc ... tgtaatgcagGAGGCGACTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTAGT