1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
ACATACGTCTCGGTGGCTGAGTACCTTGGTGTCTTTGAGCCACTGCTCTTTGAGGAGGTCAAGGCACAGATCATCCAGGGACGCAGTAACGACGAGGAAGgttaggacacacgctcctgcgctttgctttcttctcacctcagcatgttgtttgctcttaattcactggtgagttgccaactgagatttttttccctatgttttggccttgtgtggtgtgtgtag
species | Zea mays |
transcript | GRMZM2G171961_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAGGAGGTCAAGGCACAGATCATCCAGGGACGCAGTAACGACGAGGAAG A-TCTGGGATGGACTGGEST: gi|71448337|gb|DR829387.1|DR829387
genomic: TGAGGAGGTCAAGGCACAGATCATCCAGGGACGCAGTAACGACGAGGAAGgttaggacac ... gtgtgtgtagAATCTGGGATGGACTGG
EST: TGAGGAGGTCAAGGCACAGATCATCCAGGGACGCAGTAACGACGAGGAAG AATCTGGGATGGACTGGAGGAGGGGAGCAGTGGGGTCGTGCACGGAGTCTGEST: gi|211265497|gb|FL119082.1|FL119082
genomic: TGAGGAGGTCAAGGCACAGATCATCCAGGGACGCAGTAACGACGAGGAAGgttaggacac ... gtgtgtgtagAATCTGGGATGGACTGGAGGAGGGGAGCAGTGGGGTCGTGCACGGAGTCTG
EST: TGAGGAGGTCAAGGCACAGATCATCCAGGGACGCAGTAACGACGAGGAAG A-TCTGGGGATGGACTGGAGGAGGGGAGCAGTGGGGTCGTGCACGGAGTCTEST: gi|19350666|gb|BM895198.1|BM895198
genomic: TGAGGAGGTCAAGGCACAGATCATCCAGGGACGCAGTAACGACGAGGAAGgttaggacac ... gtgtgtgtagAATCTGGG-ATGGACTGGAGGAGGGGAGCAGTGGGGTCGTGCACGGAGTCT
EST: TGAGGAGGTCAAGGCGCAGATCATCCAGGGACGCAGTAACGACGAGGAAG AATCTGGGATGGACTGGAGGAGGGGGGCAGTGGGGTCGTGCACGGAGTCTGEST: gi|71430237|gb|DR811287.1|DR811287
genomic: TGAGGAGGTCAAGGCACAGATCATCCAGGGACGCAGTAACGACGAGGAAGgttaggacac ... gtgtgtgtagAATCTGGGATGGACTGGAGGAGGGGAGCAGTGGGGTCGTGCACGGAGTCTG
EST: TGAGGAGGTCAAGGCACAGATCATCCAGGGACGCAGTAACGACGAGGAAG AATCTGGGATGGACTGGAGGAGGGGAGCAGTGGGGTCGTGCACGGAGTCTG
genomic: TGAGGAGGTCAAGGCACAGATCATCCAGGGACGCAGTAACGACGAGGAAGgttaggacac ... gtgtgtgtagAATCTGGGATGGACTGGAGGAGGGGAGCAGTGGGGTCGTGCACGGAGTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACATACGTCTCGGTGGCTGAGTACCTTGGTGTCTTTGAGCCACTGCTCTTTGAGGAGGTCAAGGCACAGATCATCCAGGGACGCAGTAACGACGAGGAAGgttaggacacacgctcctgcgctttgctttcttctcacctcagcatgttgtttgctcttaattcactggtgagttgccaactgagatttttttccctatgttttggccttgtgtggtgtgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA