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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGCGGCCAGCAACCCCCCCTGATGGAGAGGAAGAATTTACTGATGATGATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAAgtgagtactgctaatctgtctttgccatgactagctaaatacactgcctagttccaccagtcgattgattgactttccaccattgaattcatgagtctcc...

Basic information

species Zea mays
transcript GRMZM2G171660_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171660_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g41910.1 (Oryza sativa), 5'ss of exon 3
TGAGCGGCCAGCAACCCCCCCTGATGGAGAGGAAGAATTTACTGATGATGATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAAgtgagtactgctaatctgtctttgccatgactagctaaatacactgcctagttccaccagtcgattgattgactttccaccattgaattcatga-gtctcc-
||| |||||||||||||| || ||||| ||||| |||||||||||||||||||| ||  ||||||| ||||| |||    |||||||||||||||||||||||||| || | || ||    ||   | |   |  ||   |       |  ||     |||    |||||     |     ||| | |  ||   || |   
TGACCGGCCAGCAACCCCACCAGATGGCGAGGACGAATTTACTGATGATGATGGTACTGTTTACAAGTGGGATCGTGTCCTGAGGGCATGGGTTCCTCAAgtgagtgcttccaacctcctgttcttaggttcatttactcatgacttttgtttttggtagtt--ctgattttgcctgagatattaattagatattgtgtttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91054747|gb|EB165165.1|EB165165
EST:     ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAA                         AATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTT
genomic: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAAgtgagtactg ... gtatttatagAATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTT
EST: gi|149070733|gb|EE159146.2|EE159146
EST:     ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAA                         AATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTT
genomic: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAAgtgagtactg ... gtatttatagAATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTT
EST: gi|148966210|gb|EE017166.2|EE017166
EST:     ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAA                         AATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTT
genomic: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAAgtgagtactg ... gtatttatagAATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTT
EST: gi|76909704|gb|DV163493.1|DV163493
EST:     ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGGATGGGTTCCTCAA                         AATGATGCATCTG
genomic: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAAgtgagtactg ... gtatttatagAATGATGCATCTG
EST: gi|149004610|gb|EE039124.2|EE039124
EST:     ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAA                         AATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTT
genomic: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAAgtgagtactg ... gtatttatagAATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTT