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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTCAACCTGCCGTCAGAGGTTGTGCCCAACACCCTCAAGAAGTCCTCCAAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgtcacactagagttgtttgcagttctgtattctgacaccagattttcacatgatgataattgaactcgtcattgctgcctgctattttgaca...

Basic information

species Zea mays
transcript GRMZM2G171484_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171484_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g73160.1 (Oryza sativa), 5'ss of exon 3
TCCTCAACCTGCCGTCAGAGGTTGTGCCCAACACCCTCAAGAAGTCCTCCAAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgta--catttgtcacactagagtt----gtttgcagttctgtattctgacaccagattttcacatgatgataattgaactcgtcattgctgcctgctattttgaca
 |||||||||||| || ||||||||||| |||||||||||||||||  ||||||||||||| || || || ||||||||||| || ||||||||||||||||   ||||| |  |  | | |||     | ||||  |  | || | || |   |||  |       ||||   |   ||     | |  | |  || ||||    
ACCTCAACCTGCCATCTGAGGTTGTGCCTAACACCCTCAAGAAGTCTGCCAAGCCCCCGTCTCGCCCATTCGGCTCTGGCCCTCCTGGTGACCGCCCCAGgtgagcatttattccttttgggtttatcatctgcatatgcgaatacggaaattggatgctattgctgtgatggatattctttaggtggtggtc--ctgtttt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211053112|gb|FL123928.1|FL123928
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTSTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|78544011|gb|DV621509.1|DV621509
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|60339885|gb|DN206858.1|DN206858
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|67035082|gb|CO463615.1|CO463615
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|17932184|gb|BM269144.1|BM269144
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTATGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|28930975|gb|CB334336.1|CB334336
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|28873901|gb|CB329830.1|CB329830
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|211053106|gb|FL123922.1|FL123922
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|211023430|gb|FL440278.1|FL440278
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGTGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|211056047|gb|FL123934.1|FL123934
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|76011993|gb|DT939163.1|DT939163
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|193503176|gb|AM937588.1|AM937588
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|76921190|gb|DV168486.1|DV168486
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|14203665|gb|BG837342.1|BG837342
EST:     AGCCCCCGTCCCGTCCCTTTGGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GG-TCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AGCCCCCGTCCCGTCCCTTTGG-CTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|5928876|gb|AW056168.1|AW056168
EST:     AAGCCCCCGGCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|211056057|gb|FL123944.1|FL123944
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|37374445|gb|CF623580.1|CF623580
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|211053113|gb|FL123929.1|FL123929
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCC-TCGCTT
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTT
EST: gi|67030453|gb|CO459202.1|CO459202
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|211053108|gb|FL123924.1|FL123924
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGAC
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGAC
EST: gi|32914955|gb|CF019767.1|CF019767
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|40303243|gb|CK347630.1|CK347630
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|67017230|gb|CO445979.1|CO445979
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|14243837|gb|BG841533.2|BG841533
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|32914944|gb|CF019756.1|CF019756
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|31353380|gb|CD437737.1|CD437737
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|211053110|gb|FL123926.1|FL123926
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|29130033|gb|CB380737.1|CB380737
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|211056051|gb|FL123938.1|FL123938
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|30087411|gb|CB885617.1|CB885617
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|37381614|gb|CF627703.1|CF627703
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|31355636|gb|CD439993.1|CD439993
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|211053117|gb|FL123933.1|FL123933
EST:     NAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGANCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|211056058|gb|FL123945.1|FL123945
EST:     AAGCCCC-GTCCCGTCCCTTTGGNTCTGGCC-ACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|211053111|gb|FL123927.1|FL123927
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAG
EST: gi|211056054|gb|FL123941.1|FL123941
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|32863602|gb|CF003284.1|CF003284
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|211023429|gb|FL440277.1|FL440277
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGTGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|211053114|gb|FL123930.1|FL123930
EST:     AAGCCCCCGTSCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCMCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGAT
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGAT
EST: gi|30087412|gb|CB885618.1|CB885618
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|211056053|gb|FL123940.1|FL123940
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGA-AGACCTAGGTTTGGGGNATAGGGATG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGG-ATAGGGATG
EST: gi|76011994|gb|DT939164.1|DT939164
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|60338236|gb|DN205209.1|DN205209
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|211056050|gb|FL123937.1|FL123937
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
EST: gi|31356366|gb|CD440723.1|CD440723
EST:     AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAG                         GGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG
genomic: AAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 109

TCCTCAACCTGCCGTCAGAGGTTGTGCCCAACACCCTCAAGAAGTCCTCCAAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGGTTACAGAGGAGGTCCACGAGGTGCAATGGGTGATTTTGGTGGTGAGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 96

TCCTCAACCTGCCGTCAGAGGTTGTGCCCAACACCCTCAAGAAGTCCTCCAAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGGTTACAGAGGAGGTCCACGAGGTGCAATGGGTGATTTTGGTGGTGAGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 113

TCCTCAACCTGCCGTCAGAGGTTGTGCCCAACACCCTCAAGAAGTCCTCCAAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGGTTACAGAGGAGGTCCACGAGGTGCAATGGGTGATTTTGGTGGTGAGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 58

TCCTCAACCTGCCGTCAGAGGTTGTGCCCAACACCCTCAAGAAGTCCTCCAAGCCCCCGTCCCGTCCCTTTGGCTCTGGCCCACCGGGTGACCGCCCCAGgtacatttgt ... tatttgacagGGGTCCCCCTCGCTTTGGGGAAGACAGACCTAGGTTTGGGGATAGGGATGGTTACAGAGGAGGTCCACGAGGTGCAATGGGTGATTTTGGTGGTGAGAAG