Sequence
atgc intronic sequence ATGC exonic sequenceGAAAGATTACCCACCAGACATGCAATGCAAGGATAAATTCTTGATTCAGAGCACGAAGGTGGCCGCCAGTACCGACATGGATGAGATCCCCCCTGATACGgtgagcaagaagtgcagaacaaatttgtaaggtttattagcgttgcattatccctatagtgaaatgatgtccacagccacacgctgctatacacggttacattacatgtgcgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G171406_T06 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os10g40140.1 (Oryza sativa), 5'ss of exon 5
GAAAGATTACCCACCAGACATGCAATGCAAGGATAAATTCTTGATTCAGAGCACGAAGGTGGCCGCCAGTACCGACATGGATGAGATCCCCCCTGATACGgtgagcaagaagtgcaga-acaaa---tttgtaaggtttattagcgttgcattatccctatagtgaaatgatgtccacagccacacgctgctatacacggttacattacatgtgcgcag
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GAAAGAGTACCCACCAGATATGCAATGCAAGGATAAATTCTTGATCCAGAGCACCAAGGTAGCTGCCAGTACTGACATGGACGAGATCCCCCCTAACACGgtgagcatacaatgcaaatatagatgatttgcaagctttattagtaatgtattattgttacaatgacat--tgactactgatgcac-caactatattccatgcatttttgtg-gttcag
upper sequence: GRMZM2G171406_T06 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g43594.1 (Oryza sativa), 5'ss of exon 5
GAAAGATTACCCACCAGACATGCAATGCAAGGATAAATTCTTGATTCAGAGCACGAAGGTGGCCGCCAGTACCGACATGGATGAGATCCCCCCTGATACGgtgagcaagaagtgcaga-acaaatttgtaaggtttattagcgttgcattatccctatagtgaaatgatgtccacagccacacgctgctatacacggttacattacatgtgcgcag
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GAAAGAGTACCCACAAGATATGCAATGCAAGGATAAGTTCTTGATTCAGAGCACTAGGGTAGCTGCCAGTACTGACATGGACGAGATTCCTCCTGATACGgtgagcataaaatgcaaatatatgattttcaagctt--tagtgatgcattattgttaaaatgacatgacttcta-acctacaaact---atatgccatt----tttgtgtgtccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|89250482|gb|DY622268.1|DY622268EST: GCACGAAGGTGGCCGCCAGTACCGACATGGATGAGATCCCCCCTGATACG TTCAACAAGGAAGCTGATAAGGTAATCGAGGAAATGAAGCTCAAGGTTGTC
genomic: GCACGAAGGTGGCCGCCAGTACCGACATGGATGAGATCCCCCCTGATACGgtgagcaaga ... atgtgcgcagTTCAACAAGGAAGCTGATAAGGTAATCGAGGAAATGAAGCTCAAGGTTGTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAAGATTACCCACCAGACATGCAATGCAAGGATAAATTCTTGATTCAGAGCACGAAGGTGGCCGCCAGTACCGACATGGATGAGATCCCCCCTGATACGgtgagcaagaagtgcagaacaaatttgtaaggtttattagcgttgcattatccctatagtgaaatgatgtccacagccacacgctgctatacacggttacattacatgtgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC