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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCCCATTTATTTTCAGGTCAAAACAACATCGCCGAGGAAGTATTTCGTCCGGCCGAACGCGAGCATCGTCCAGCCATGGGATTCTTGCACAATAACGAgtaagcacctgtttctccatggaccatggctatgtttagcatcctccgtttggatttcgatgtgtgagtgtttgtgtctccctgccttctctcccatctggggggtacag

Basic information

species Zea mays
transcript GRMZM2G171406_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171406_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g43594.1 (Oryza sativa), 5'ss of exon 4
TGCCCCATTTATTTTCAGGTCAAAACAACATCGCCGAGGAAGTATTTCGTCCGGCCGAACGCGAGCATCGTCCAGCCATGGGATTCTTGCACAATAACGAgtaagcacctgtttc---tccatggaccatggcta-tgttta-gcatcctccgtttgg--atttcgatgtgtgagtgtttgtgtctccct----gccttctctcccatctggggggtacag---------------------------
                  |||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||  || ||||||   | | || || ||  | | |   ||    |   | |||| |  ||||    || ||       |||  || ||    || |  | |  | ||| |    |                               
------------------GTCAAAACAACATCACCAAGGAAGTATTTCGTCCGGCCGAACGCGAACATCGTCCAGCCATGGGATTCTTGCACAATAACAAgtaaatacatgtttccaattcttgcacaataacaagtaaatacatgtttccagttttgccattttctagtatgccaagcagtggttctctttaggcttcttgtttcgtcttgatatttggatatctgcattcttgtttgttggtgtag

upper sequence: GRMZM2G171406_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os10g40140.1 (Oryza sativa), 5'ss of exon 4
TGCCCCATTTATTTTCAGGTCAAAACAACATCGCCGAGGAAGTATTTCGTCCGGCCGAACGCGAGCATCGTCCAGCCATGGGATTCTTGCACAATAACGAgtaagcacctgtttctccatggaccatg----gctatgtttagc---atcctccgtttggatttcgatgtg---tgagtgtttgtgtctccctgccttctctcccatctggggggtacag
                  ||||| || ||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||  || ||||||    | | | ||     |   ||   |||     |   | || || |    || ||   |   ||||||  | |   |  || |  |    |  || |  |  ||
------------------GTCAAGACGACATCACCGAGGAAGTATTTTGTCCGGCCGAACGCGAGCATCATCCAGCCATGGGATTCTTGCACAATAACAAgtaaatacatgtttccagtttggctattttatggcgtgccaagccatggctctctttaggctcattatttggtcttgatgtttggatatatatatctgcattgttgttcggtga-tgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89762872|gb|DY690298.1|DY690298
EST:     CCGGCCGAACGCGAGCATCGTCCAGCCATGGGATTCTTGCACAATAACGA                         TTACGCTGCAGGCACAGAAAGATTACCCACCAGACATGCAATGCAAGGATA
genomic: CCGGCCGAACGCGAGCATCGTCCAGCCATGGGATTCTTGCACAATAACGAgtaagcacct ... gggggtacagTTACGCTGCAGGCACAGAAAGATTACCCACCAGACATGCAATGCAAGGATA