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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGACAACTTGGTTTTACATTCTCCTTTCCAGTGAAGCAAAATTCAGTTGCATCTGGCACTCTTATCAAATGGACAAAGGGTTTTGCAATTGATGAAATGgtatgatcagttcttgtagcctactttatgtattgaagactaatttaagaatatgggcctgtttcaggagtagaacaaatgccatgtttcatcctgtcaa...

Basic information

species Zea mays
transcript GRMZM2G171373_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171373_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g52450.2 (Oryza sativa), 5'ss of exon 3
AAGACAACTTGGTTTTACATTCTCCTTTCCAGTGAAGCAAAATTCAGTTGCATCTGGCACTCTTATCAAATGGACAAAGGGTTTTGCAATTGATGAAATGgtatgatcagttcttgtagcctactttatgtattgaaga-ctaatttaagaatatg-ggcctgtttcaggagtagaacaaatgccatgtttcatcctgtcaa---------------------------------------------------------------------------------------------
|||| |||| |||||||||||||||||||||||||| ||||| ||| | |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||  | |  |||     |      |  |   | |||| | |  |   ||| ||||   || |  ||  | | |  || |||   |||||         |  |                                                                                             
AAGAGAACTAGGTTTTACATTCTCCTTTCCAGTGAAACAAAAATCATTGGCATCTGGCACTCTTATCAAGTGGACGAAGAGTTTTGCAATTGATGAAATGgtcagttttgttacctcacatatgtaaaccaaatgaaaatcctaaggaaggatatccagcttcattgtgaatttaaaaaaaaaacatgtcgtcctggatggaaattcaccaattgtgaattctcttttagttctgttatatcttatatatccaattagttgtgtataacatacttacttgttgctttgaaggcag

upper sequence: GRMZM2G171373_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA07G12190.1 (Glycine max), 5'ss of exon 3
AAGACAACTTGGTTTTACATTCTCCTTTCCAGTGAAGCAAAATTCAGTTGCATCTGGCACTCTTATCAAATGGACAAAGGGTTTTGCAATTGATGAAATGgtatgatcagttcttgtagcctactttatgtattgaagactaatttaagaatatgggcctgtt-tcaggagtagaacaaatgccatgtttcatcctgtcaa-------
|||  |||| |||||||||||||| ||||||||||||||||  ||  | |||||||| ||||| || || ||||| || |||||    ||||| ||   ||||       |||||||  |||   |||| | ||    | || | ||      | | | ||   |   |  |    |  ||  | | ||| ||| ||           
AAGGGAACTGGGTTTTACATTCTCATTTCCAGTGAAGCAAACATCCATAGCATCTGGGACTCTAATAAAGTGGACTAAAGGTTTCAATATTGAGGATGCGgta------attcttgttaccttgattattttttttt-agtattctatctgccttgccttgccattctgtctttttctcatctcct-tttgatcatgattgtgatgca

upper sequence: GRMZM2G171373_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA01G01070.1 (Glycine max), 5'ss of exon 3
AAGACAACTTGGTTTTACATTCTCCTTTCCAGTGAAGCAAAATTCAGTTGCATCTGGCACTCTTATCAAATGGACAAAGGGTTTTGCAATTGATGAAATGgtatgatcagttcttgtagcct--acttta-tgtattgaagactaatttaagaatatgggcctgtttcaggagtagaacaaatgccatgtt--tcatcctgtcaa---
|||  |||| |||||||| |||||||||||||||| |||||  ||| |||||||||| | ||| || || ||||| ||| ||||    ||||| || ||||||       ||||| |  |||  | |||  | |||| ||| ||| |||     |      || | | |     |   ||  ||   || |  | ||  ||       
AAGGGAACTGGGTTTTACCTTCTCCTTTCCAGTGAGGCAAACATCAATTGCATCTGGGAATCTAATAAAGTGGACTAAGAGTTTCAATATTGAGGATATGgta------attcttattaccttgattttgctatattcaagtctattttcc--ttgccattctttcttattgtcatctcatttgttttgatcgtgattatggtgcata

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78087466|gb|DV515859.1|DV515859
EST:     CATCTGGCACTCTTATCAAATGGACAAAGGGTTTTGCAATTGATGAAATG                         GTAGGAAAGGACGTAGTGGCAGAATTAAACAAGGCTATCAAACGCCAAGGA
genomic: CATCTGGCACTCTTATCAAATGGACAAAGGGTTTTGCAATTGATGAAATGgtatgatcag ... ttgaatacagGTAGGAAAGGACGTAGTGGCAGAATTAAACAAGGCTATCAAACGCCAAGGA
EST: gi|71757201|gb|DR955138.1|DR955138
EST:     CATCTGGCACTCTTATCAAATGGACAAAGGGTTTTGCAATTGATGAAATG                         GTAGGAAAGGACGTAGTGGCAGAATTAAACAAGGCTATCAAACGCCAAGGA
genomic: CATCTGGCACTCTTATCAAATGGACAAAGGGTTTTGCAATTGATGAAATGgtatgatcag ... ttgaatacagGTAGGAAAGGACGTAGTGGCAGAATTAAACAAGGCTATCAAACGCCAAGGA
EST: gi|78106048|gb|DV524466.1|DV524466
EST:     CATCTGGCACTCTTATCAAATGGACAAAGGGTTTTGCAATTGATGAAATG                         GTAGGAAAGGACGTAGTGGCAGAATTAAACAAGGCTATCAAACGCCAAGGA
genomic: CATCTGGCACTCTTATCAAATGGACAAAGGGTTTTGCAATTGATGAAATGgtatgatcag ... ttgaatacagGTAGGAAAGGACGTAGTGGCAGAATTAAACAAGGCTATCAAACGCCAAGGA
EST: gi|71448675|gb|DR829725.1|DR829725
EST:     CATCTGGCACTCTTATCAAATGGACAAAGGGTTTTGCAATTGATGAAATG                         GTAGGAAAGGACGTAGTGGCAGAATTAAACAAGGCTATCAAACGCCAAGGA
genomic: CATCTGGCACTCTTATCAAATGGACAAAGGGTTTTGCAATTGATGAAATGgtatgatcag ... ttgaatacagGTAGGAAAGGACGTAGTGGCAGAATTAAACAAGGCTATCAAACGCCAAGGA
EST: gi|78089619|gb|DV517993.1|DV517993
EST:     CATCTGGCACTCTTATCAAATGGACAAAGGGTTTTGCAATTGATGAAATG                         GTAGGAAAGGACGTAGTGGCAGAATTAAACAAGGCTATCAAACGCCAAGGA
genomic: CATCTGGCACTCTTATCAAATGGACAAAGGGTTTTGCAATTGATGAAATGgtatgatcag ... ttgaatacagGTAGGAAAGGACGTAGTGGCAGAATTAAACAAGGCTATCAAACGCCAAGGA
EST: gi|78080649|gb|DV509061.1|DV509061
EST:     CATCTGGCACTCTTATCAAATGGACAAAGGGTTTTGCAATTGATGAAATG                         GTAGGAAAGGACGTAGTGGCAGAATTAAACAAGGCTATCAAACGCCAAGGA
genomic: CATCTGGCACTCTTATCAAATGGACAAAGGGTTTTGCAATTGATGAAATGgtatgatcag ... ttgaatacagGTAGGAAAGGACGTAGTGGCAGAATTAAACAAGGCTATCAAACGCCAAGGA
EST: gi|94477216|gb|EB706174.1|EB706174
EST:     CATCTGGCACTCTTATCAAATGGACAAAGGGTTTTGCAATTGATGAAATG                         GTAGGAAAGGACGTAGTGGCAGAATTAAACAAGGCTATCAAACGCCAAGGA
genomic: CATCTGGCACTCTTATCAAATGGACAAAGGGTTTTGCAATTGATGAAATGgtatgatcag ... ttgaatacagGTAGGAAAGGACGTAGTGGCAGAATTAAACAAGGCTATCAAACGCCAAGGA
EST: gi|149112472|gb|EE295341.2|EE295341
EST:     CATCTGGCACTCTTATCAAATGGACAAAGGGTTTTGCAATTGATGAAATG                         GTAGGAAAGGACGTAGTGGCAGAATTAAACAAGGCTATCAAACGCCAAGGA
genomic: CATCTGGCACTCTTATCAAATGGACAAAGGGTTTTGCAATTGATGAAATGgtatgatcag ... ttgaatacagGTAGGAAAGGACGTAGTGGCAGAATTAAACAAGGCTATCAAACGCCAAGGA
EST: gi|149047925|gb|EE048253.2|EE048253
EST:     CATCTGGCACTCTTATCAAATGGACAAAGGGTTTTGCAATTGATGAAATG                         GTAGGAAAGGACGTAGTGGCAGAATTAAACAAGGCTATCAAACGCCAAGGA
genomic: CATCTGGCACTCTTATCAAATGGACAAAGGGTTTTGCAATTGATGAAATGgtatgatcag ... ttgaatacagGTAGGAAAGGACGTAGTGGCAGAATTAAACAAGGCTATCAAACGCCAAGGA