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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTACAAGAACTTCAACAAGGCCGCGAGGGACCTCATCGGACGCCTCCAGAAGATCGACGGAGACAACTACCCTGAGgtaccacactgcatgtcctgttcgatcgtccagtgaacttgttcgtccaagcaactgcaacaagtgcagccttctgctacatgctcgccctgtgcag

Basic information

species Zea mays
transcript GRMZM2G171349_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171349_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g04030.3 (Oryza sativa), 5'ss of exon 3
GGGTACAAGAACTTCAACAAGGCCGCGAGGGACCTCATCGGACGCCTCCAGAAGATCGACGGAGACAACTACCCTGAGgtaccacactgcatgtcctgttcgatcgtccagtgaacttgttcgtccaagcaactgcaacaagtgcagccttctgctacatgctcgccctgtgcag----
|||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||| || ||||||||||| |||||| |   | | |  |     ||  |    | |     |   || |         |  ||   ||     ||    ||  |||  | |  |          
GGGTACAAGAACTTCAACAAGGCCGCCAGGGATCTCATCGGCCGCCTCCAGAAGGTCGATGGTGACAACTACCCAGAGgtagctagcagaaattggctctctctgaatctgaatgttcactc-tttggttgtttttaattggtagtatctgaatctgaatgaccacatttgattttaat

upper sequence: GRMZM2G171349_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA16G24670.1 (Glycine max), 5'ss of exon 4
GGGTACAAGAACTTCAACAAGGCCGCGAGGGACCTCATCGGACGCCTCCAGAAGATCGACGGAGACAACTACCCTGAGgtaccacactgcatgt--cctgttcgatcgtccagtgaacttgttcgtccaagcaactgcaacaagt-gcagccttctgctaca-------tgctcgccctg-tgcag
|||   |||||||||||||||   || ||||| ||||||   ||||| |||||||| ||||| |||||||||||||| |||      | | |||    || |  |   |    | ||  | |   | |||  || |        | || |  || |  ||         || | ||     |||||
GGGCTTAAGAACTTCAACAAGCATGCCAGGGAGCTCATCACCCGCCTTCAGAAGATTGACGGTGACAACTACCCTGAAgtatgttttttcttgtattttgcttaaggtttacataaaagtttagttgcaaataaatattgtggattgctgagttgtaatatcataaaattggtggcttcactgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481289|gb|EY254211.1|EY254211
EST:     GGGACCTCATCGGACGCCTCCAGAAGATCGACGGAGACAACTACCCTGAG                         ACGCTGTGCCGGATGTTCATCATCAACGCGGGGCAAGGGTTCAGGCTTCTC
genomic: GGGACCTCATCGGACGCCTCCAGAAGATCGACGGAGACAACTACCCTGAGgtaccacact ... ccctgtgcagACGCTGTGCCGGATGTTCATCATCAACGCGGGGCAAGGGTTCAGGCTTCTC