Sequence
atgc intronic sequence ATGC exonic sequenceGTCTGGTGGTCTCTTTCAGATTCAAAATATGCTGGGACAGCTATGTTTATAAAGAAAAAGTTTGAGCCTAAGAAGGTGTCTTTCAACTTGGATAGAACATgtatgtttggagatgatttcatattatcctagctctgtacacaattttctattttctatgctaatgtagcagcaattctgttttgcatattatagtttta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G170291_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os12g18200.1 (Oryza sativa), 5'ss of exon 3
GTCTGGTGGTCTCTTTCAGATTCAAAATATGCTGGGACAGCTATGTTTATAAAGAAAAAGTTTGAGCCTAAGAAGGTGTCTTTCAACTTGGATAGAACATgtatgtttggag--------atgatttcatattatcctagctctgtacacaattttctattttctatgc-taatgtagcagcaattctgttttgcatattatagtttta
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GTCTGGTGGTCTCTTTCAGACTCCAAATATGCAGGCACAGCTATGATTATAAAGAAGAAGTTTGAACCAAAGAAAGTGTCATTCAACTTGGATAGAACATgtatgttcagagttgcatgcatgacttcatattttcct---ttcataggcaatctcccgttatcggtgtgttttgtagtgtccatgtgctttgctctggtgtg------
upper sequence: GRMZM2G170291_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA04G36610.1 (Glycine max), 5'ss of exon 3
GTCTGGTGGTCTCTTTCAGATTCAAAATATGCTGGGACAGCTATGTTTATAAAGAAAAAGTTTGAGCCTAAGAAGGTGTCTTTCAACTTGGATAGAACATgtatgtttggagatgatttcatattatcctagctctgtacacaattttctattttctatgctaatgtagcagcaattctgttttgcatattatagtttta
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GTTTGGTGGTCTCTTGCAGATTCAAAGTATGCAGGGACAGCACTACTGGTGAAAAAATGCTTCAAGCCAAAAAGTGTTGTTTTCAATCTTGATAAATTAGgtatccagctttgcagacttttcctattgtgtttatggcattaaacatttcttttgcatatatatatatatatatatatatattcagcattcaaatgtcaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|91873537|gb|EB403494.1|EB403494EST: AAAGAAAAAGTTTGAGCCTAAGAAGGTGTCTTTCAACTTGGATAGAACAT GAGGAGGAAAATGCATTTCAAAGAAGACGTAAGTGGGACAAGAGGATGCTG
genomic: AAAGAAAAAGTTTGAGCCTAAGAAGGTGTCTTTCAACTTGGATAGAACATgtatgtttgg ... tggatggaagGAGGAGGAAAATGCATTTCAAAGAAGACGTAAGTGGGACAAGAGGATGCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCTGGTGGTCTCTTTCAGATTCAAAATATGCTGGGACAGCTATGTTTATAAAGAAAAAGTTTGAGCCTAAGAAGGTGTCTTTCAACTTGGATAGAACATgtatgtttggagatgatttcatattatcctagctctgtacacaattttctattttctatgctaatgtagcagcaattctgttttgcatattatagtttta
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG