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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGTGTTCTTCCTGCCCCCAGGAGATCTTTTTGTGGCAATTATGCCAGAGTCGTGAATCAAATTTTGCAAGGCCTGACCAATATGCATgtattaccctccttctcccactcctcattctgtcagttttatctgtgttctagatatgcttatacctgaatggtattttttcttctgttttttctcaag

Basic information

species Zea mays
transcript GRMZM2G169927_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G169927_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g04660.1 (Oryza sativa), 5'ss of exon 3
GCATGTGTTCTTCCTGCCCCCAGGAGATCTTTTTGTGGCAATTATGCCAGAGTCGTGAATCAAATTTTGCAAGGCCTGACCAATATGCATgtattaccctccttctcccactcctcattctgtcagttttatctgtgttctagatatgcttatacc-tgaat-----ggtattttttcttctgttt-tttctcaag
|| || ||||||||| | |||| |||||||| ||||| ||| ||||| ||||| |||||||| ||||||||||||||||||||| |||| ||||   ||||| | | | | | |  ||  |||  || || |   |||  || || |    ||    ||||      | | || ||| |||||| | ||||| |||
GCGTGCGTTCTTCCTCCTCCCAAGAGATCTTCTTGTGCCAACTATGCTAGAGTTGTGAATCATATTTTGCAAGGCCTGACCAATTTGCAGgtatcttcctccattttcaattacatatgttgt--gtattgtgcatgtcataaatgtttcaatttgatgaacatttagcttttgtttgttctgtctctttcttaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71447266|gb|DR828316.1|DR828316
EST:     ATTATGCCAGAGTCGTGAATCAAATTTTGCAAGGCCTGACCAATATGCAT                         --GT---T--G----CCTCTGGAGAAGTCCGAGCCTATGGATGATGATCTT
genomic: ATTATGCCAGAGTCGTGAATCAAATTTTGCAAGGCCTGACCAATATGCATgtattaccct ... ttttctcaagTTGTGGCTCAGGTTGCCTCTGGAGAAGTCCGAGCCTATGGATGATGATCTT
EST: gi|31354779|gb|CD439136.1|CD439136
EST:     ATTATGCCAGAGTCGTGAATCAAATTTTGCAAGGCCTGACCAATATGCAT                         TTGTGGCTCAGGTTGCCTCTGGAGAAGTCCGAGCCTATGGATGATGATCTT
genomic: ATTATGCCAGAGTCGTGAATCAAATTTTGCAAGGCCTGACCAATATGCATgtattaccct ... ttttctcaagTTGTGGCTCAGGTTGCCTCTGGAGAAGTCCGAGCCTATGGATGATGATCTT
EST: gi|71772935|gb|DR970858.1|DR970858
EST:     ATTATGCCAGAGTCGTGAATCAAATTTTGCAAGGCCTGACCAATATGCAT                         TTGTGGCTCAGGTTGCCTCTGGAGAAGTCCGAGCCTATGGATGATGATCTT
genomic: ATTATGCCAGAGTCGTGAATCAAATTTTGCAAGGCCTGACCAATATGCATgtattaccct ... ttttctcaagTTGTGGCTCAGGTTGCCTCTGGAGAAGTCCGAGCCTATGGATGATGATCTT