1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCTCAAGGCGTCCTACGATCGAACTGGCTTGCCTGCTCTGATTGCGGAGGTCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCGgtgggtgagtttaggacgtaaatccaatcatttcatttttgttatcttagggggtgtttggtttgtagggactaatttttagtccctacattttattcca...
species | Zea mays |
transcript | GRMZM2G169516_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCG GTTCAGATCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCTTAGTGTTEST: gi|71438048|gb|DR819098.1|DR819098
genomic: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCGgtgggtgagt ... acataaacagGTTCAGATCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCTTAGTGTT
EST: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCG GTTCAGATCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCTTAGTGTTEST: gi|91870856|gb|EB401117.1|EB401117
genomic: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCGgtgggtgagt ... acataaacagGTTCAGATCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCTTAGTGTT
EST: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGATTTTTGATCCG GTTCAGATCGCTCEST: gi|148959576|gb|EC905536.2|EC905536
genomic: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCGgtgggtgagt ... acataaacagGTTCAGATCGCTC
EST: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCG GTTCAGATCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCTTAGTGTTEST: gi|148972168|gb|EE023038.2|EE023038
genomic: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCGgtgggtgagt ... acataaacagGTTCAGATCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCTTAGTGTT
EST: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCG GTTCAGATCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCTTAGTGTTEST: gi|149026795|gb|EE046156.2|EE046156
genomic: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCGgtgggtgagt ... acataaacagGTTCAGATCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCTTAGTGTT
EST: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCG GTTCAGATCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCTTAGTGTTEST: gi|149082958|gb|EE172194.2|EE172194
genomic: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCGgtgggtgagt ... acataaacagGTTCAGATCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCTTAGTGTT
EST: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCG GTTCAGATCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCTEST: gi|71324172|gb|DR798789.1|DR798789
genomic: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCGgtgggtgagt ... acataaacagGTTCAGATCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCT
EST: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCG GTTCAGATCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCTTAGTGTTEST: gi|24765189|gb|CA400348.1|CA400348
genomic: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCGgtgggtgagt ... acataaacagGTTCAGATCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCTTAGTGTT
EST: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCG GTTCAGATCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCTTAGTGTTEST: gi|71442934|gb|DR823984.1|DR823984
genomic: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCGgtgggtgagt ... acataaacagGTTCAGATCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCTTAGTGTT
EST: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCG GTTCAGATCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCTTAGTGTTEST: gi|76926401|gb|DV170844.1|DV170844
genomic: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCGgtgggtgagt ... acataaacagGTTCAGATCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCTTAGTGTT
EST: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCG ----A--TCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCTTAGTGTTEST: gi|148950313|gb|EC895872.2|EC895872
genomic: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCGgtgggtgagt ... acataaacagGTTCAGATCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCTTAGTGTT
EST: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCG GTTCAGATCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCTTAGTGTTEST: gi|71438723|gb|DR819773.1|DR819773
genomic: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCGgtgggtgagt ... acataaacagGTTCAGATCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCTTAGTGTT
EST: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCG GTGGGTTCAGATCGCTCAGGCATATGEST: gi|71433348|gb|DR814398.1|DR814398
genomic: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCGgtgggtgagt ... acataaacagGT---T-CAGATCGCTCAGGCATATG
EST: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCG GTTCAGATCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCTTAGTGTTEST: gi|71318677|gb|DR796095.1|DR796095
genomic: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCGgtgggtgagt ... acataaacagGTTCAGATCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCTTAGTGTT
EST: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCG GTTCAGATCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCTTAGTGTT
genomic: TCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCGgtgggtgagt ... acataaacagGTTCAGATCGCTCAGGCATATGAGAAAAACGGAGCAGCATGCCTTAGTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCAAGGCGTCCTACGATCGAACTGGCTTGCCTGCTCTGATTGCGGAGGTCAAGAAGGCTTCACCAAGCCGGGGTGTTATCAGGGAGAATTTTGATCCGgtgggtgagtttaggacgtaaatccaatcatttcatttttgttatcttagggggtgtttggtttgtagggactaatttttagtccctacattttattcca
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA