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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAGgtgagctttccatcttcagctactggaaatcaaaggatcctctccagcacaaactgatgagaaaaggtttgttttgttgttgcattgtgtgtccaacag

Basic information

species Zea mays
transcript GRMZM2G169005_T02
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86470243|gb|DY236613.1|DY236613
EST:     CTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAG                         CTGAGTGGCATGGATATGGTCCAAAGGCTTCAGTGCATGCTTAAGAGAGTC
genomic: CTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAGgtgagctttc ... tgtccaacagCTGAGTGGCATGGATATGGTCCAAAGGCTTCAGTGCATGCTTAAGAGAGTC
EST: gi|211181714|gb|FL126396.1|FL126396
EST:     CTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAG                         CTGAGTGGCATGGATATGGTCCAAAGGCTTCAGTGCATGCTTAAGAGAGTC
genomic: CTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAGgtgagctttc ... tgtccaacagCTGAGTGGCATGGATATGGTCCAAAGGCTTCAGTGCATGCTTAAGAGAGTC
EST: gi|13178344|gb|BG349602.1|BG349602
EST:     CTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAG                         CTGAGTGGCATGGATATGGTCCAAAGGCTTCAGTGCATGCTTAAGAGAGTC
genomic: CTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAGgtgagctttc ... tgtccaacagCTGAGTGGCATGGATATGGTCCAAAGGCTTCAGTGCATGCTTAAGAGAGTC
EST: gi|71308191|gb|DR790329.1|DR790329
EST:     CTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAG                         CTGAGTGGCATGGATATGGTCCAAAGGCTTCAGTGCATGCTTAAGAGAGTC
genomic: CTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAGgtgagctttc ... tgtccaacagCTGAGTGGCATGGATATGGTCCAAAGGCTTCAGTGCATGCTTAAGAGAGTC
EST: gi|71303157|gb|DR787684.1|DR787684
EST:     CTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAG                         CTGAGTGGCATGGATAGGGTCCAAAGGCTTCAGTGCATGCTTAAGAGAGTC
genomic: CTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAGgtgagctttc ... tgtccaacagCTGAGTGGCATGGATATGGTCCAAAGGCTTCAGTGCATGCTTAAGAGAGTC
EST: gi|211181712|gb|FL126394.1|FL126394
EST:     CTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAG                         CTGAGTGGCATGGATATGGTCCAAAGGCTTCAGTGCATGCTTAAGAGAGTC
genomic: CTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAGgtgagctttc ... tgtccaacagCTGAGTGGCATGGATATGGTCCAAAGGCTTCAGTGCATGCTTAAGAGAGTC
EST: gi|211181713|gb|FL126395.1|FL126395
EST:     CTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAG                         CTGAGTGGCATGGATATGGTCCAAAGGCTTCAG
genomic: CTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAGgtgagctttc ... tgtccaacagCTGAGTGGCATGGATATGGTCCAAAGGCTTCAG
EST: gi|211181718|gb|FL126400.1|FL126400
EST:     CTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAG                         CTGAGTGGCATGGATATGGTCCAAAGGCTTCAGTGCATGCTTAAGAGAGTC
genomic: CTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAGgtgagctttc ... tgtccaacagCTGAGTGGCATGGATATGGTCCAAAGGCTTCAGTGCATGCTTAAGAGAGTC
EST: gi|78088419|gb|DV516812.1|DV516812
EST:     CTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAG                         CTGAGTGGCATGGATATGGTCCAAAGGCTTCAGTGCATGCTTAAGAGAGTC
genomic: CTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAGgtgagctttc ... tgtccaacagCTGAGTGGCATGGATATGGTCCAAAGGCTTCAGTGCATGCTTAAGAGAGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAGgtgagctttccatcttcagctactggaaatcaaaggatcctctccagcacaaactgatgagaaaaggtttgttttgttgttgcattgtgtgtccaacag

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