Sequence
atgc intronic sequence ATGC exonic sequenceGGACAAGCTGGAGAAGTCTATGGTGGCGGACAACAAGTCCGGTAAGAGTGTCCAGAGTGAGGTGCGCACCAGTTCCGGCATGTTCCTCGAGAAGAAGCAGgtgagcatacggcactacggtcgatttcactttctttccatcgtcatcttctgggttcgaatggttcggagatggaaaggagtatcatgtagaatctttg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G168506_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os10g27340.2 (Oryza sativa), 5'ss of exon 3
GGACAAGCTGGAGAAGTCTATGGTGGCGGACAACAAGTCCGGTAAGAGTGTCCAGAGTGAGGTGCGCACCAGTTCCGGCATGTTCCTCGAGAAGAAGCAGgtgagcatacggc----actacggtcgatttcact---ttctttccatcgtcatcttctgggttcgaatggttcggagatggaaaggagtatcatgtagaatctttg
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GGACAAGCTGGAGAAGTCGATGGTGGCGGACAACGAGTCCGGGAAGAGCGTCATGAGCGAGGTGCGGACCAGCTCCGGCATGTTCCTCGAGAAGAAGCAGgtcagcagccagccaccgcaccgcctgattccgttctgttctttcgataatgttttgaggtgttggattggtcccgacctggttataggcctcac-tggct------
upper sequence: GRMZM2G168506_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA13G04940.1 (Glycine max), 5'ss of exon 4
GGACAAGCTGGAGAAGTCTATGGTGGCGGACAACAAGTCCGGTAAGAGTGTCCAGAGTGAGGTGCGCACCAGTTCCGGCATGTTCCTCGAGAAGAAGCAGgtgagcatacggcactacggtcgatttcactttctttccat-cgtcatcttctgggttcgaatggttcggagatgg--aaaggagtatcatgtaga-atctttg---
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GGACAAGCTGGAGAAGTCTATGGTGGCAGATAACGAGTCTGGTAAAAGCATAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgt----atgatgaatcaaagatgattt-actttatgcttgtgtgaaaacctttaagttct--tcatttgattatgattaattatgtagcatatagagaagtatggtt
upper sequence: GRMZM2G168506_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA19G02110.1 (Glycine max), 5'ss of exon 4
GGACAAGCTGGAGAAGTCTATGGTGGCGGACAACAAGTCCGGTAAGAGTGTCCAGAGTGAGGTGCGCACCAGTTCCGGCATGTTCCTCGAGAAGAAGCAGgtgagcatacggcactacggtcgatttcactttctttccat---cgtcatcttctgggttcgaatg-gttcggagatg-gaaaggagtatcatgtagaatctttg
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GGACAAGCTGGAGAAGTCTATGGTGGCAGATAATGATTCCGGTAAAAGCATAATGAGTGATATCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaatcaaagatgatttactttacacttatgtgaaaaactttaatttcttcatttgattatgatcaattatatggcaagcatatagagaagtat-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|50334167|gb|CO529293.1|CO529293EST: TCCAGAGTGAGGTGCGCACCAGTTCCGGCATGTTCCTCGAGAAGAAGCAG GGAAAAAGACTGGGAAGGCCCCATGGTCCTAGGTTCAAAATGAAGCCTCAA
genomic: TCCAGAGTGAGGTGCGCACCAGTTCCGGCATGTTCCTCGAGAAGAAGCAGgtgagcatac ... tgtcacccagGGAAAAAGACTGGGAAGGCCCCATGGTCCTAGGTTCAAAATGAAGCCTCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGACAAGCTGGAGAAGTCTATGGTGGCGGACAACAAGTCCGGTAAGAGTGTCCAGAGTGAGGTGCGCACCAGTTCCGGCATGTTCCTCGAGAAGAAGCAGgtgagcatacggcactacggtcgatttcactttctttccatcgtcatcttctgggttcgaatggttcggagatggaaaggagtatcatgtagaatctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC