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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCCAAGGCGTTCCGGGAGGCGTTGCTTGGCGCTGGGTGGAGTGTTGGCCGGTCGCCAGTGCACCACGCCGTCACAGCCTCGGATGGCACTACCAAGgtcatagatatgacgatatgtgacagtaaaacaccaatcaagcaaatagccctgtccacactgcctttattatttatcgcatgctgctgggatttccacgtgcactggtctgggggctcatgacaattctttctgttcttgtag

Basic information

species Zea mays
transcript GRMZM2G168412_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168412_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g74190.1 (Oryza sativa), 5'ss of exon 3
TGCCCAAGGCGTTCCGGGAGGCGTTGCTTGGCGCTGGGTGGAGTGTTGGCCGGTCGCCAGTGCACCACGCCGTCACAGCCTCGGATGGCACTACCAAGgtcatagatatgacgatat-gtgacagtaaaacaccaatcaagcaaatagccctgtccacactgcctttattatttatcgcatgctgctgggatttccacgtgcactggtctgggggctcatgacaattctttctgttcttgtag
| || |||| |||||| ||||| ||| | |||||||| ||||  |||||||| |||||||||||||| || || || ||||| ||||||||||||||||| | |    |     | | |||||   || | | |  | |  ||| ||   ||  ||    ||   | | |     | |||| ||  |  |||       || | |||                                    
TACCAAAGGTGTTCCGTGAGGCCTTGGTCGGCGCTGGCTGGAAGGTTGGCCGCTCGCCAGTGCACCATGCTGTGACGGCCTCCGATGGCACTACCAAGgttaaaagcctccttgtgtcgtgactccaagatatctttgagacaagtacatctagccttg-tgtgctcact-----tggcatacttttttgatcct---atgaattgg------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13150086|gb|BG320408.1|BG320408
EST:     GCCGGTCGCCAGTGCACCACGCCGTCACAGCCTCGGATGGCACTACCAAG                         ATACTTCTCAAGTTGGAGGATAACCGGTTGATCGAGACAGTGGGGATTCCT
genomic: GCCGGTCGCCAGTGCACCACGCCGTCACAGCCTCGGATGGCACTACCAAGgtcatagata ... gttcttgtagATACTTCTCAAGTTGGAGGATAACCGGTTGATCGAGACAGTGGGGATTCCT