Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCTGAGCATGCTCGGTGCCACCAAAAGACTGAGCTGGAGAAGGCTAAAGCAACCCTGTTATTGGCAACTCTTCCTAAGTCATTGCCTTGCAGAGATAAgtatgtttattcatcttcctgagtgtttgttgtgtgcctcacaaaaactgctacttagctaaagtctcatatcag

Basic information

species Zea mays
transcript GRMZM2G168249_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168249_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os06g08790.1 (Oryza sativa), 5'ss of exon 5
TTCCTGAGCATGCTCGGTGCCACCAAAAGACTGAGCTGGAGAAGGCTAAAGCAACCCTGTTATTGGCAACTCTTCCTAAGTCATTGCCTTGCAGAGATAAgtatgtttattcatcttc-ctgagtgttt-gttgtgtgcctcacaaaaactgctacttagctaaagtctcatatcag
||||||| ||||  ||||| || ||||||||  | ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||  | ||| ||  | |  |||||       |  ||     ||||||||  | || | ||||||||| ||||
TTCCTGAACATGTCCGGTGTCATCAAAAGACCAATCTGGAGAAGGCAAAAGCAACCCTGTTATTGGCAACTCTTCCTAAGTCGTTACCTTGTAGGGATAAgtatgttagtacatttttgcagcttgtttcaaccactttcttttgcaaactgcttttgagttgaagtctcatgtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30052379|gb|AI065668.2|AI065668
EST:     GTCATTGCCTTGCAGAGATAA                         AGAAATGGATGAGATATCAATATTTGTAAAGGATGCAATCTGCAACAACCA
genomic: GTCATTGCCTTGCAGAGATAAgtatgtttat ... ctcatatcagAGAAATGGATGAGATATCAATATTTGTAAAGGATGCAATCTGCAACAACCA
EST: gi|31354612|gb|CD438969.1|CD438969
EST:     GCAACCCTGTTATTGGCAACTCTTCCTAAGTCATTGCCTTGCAGAGATAA                         AGAAATGGATGAGATATCAATATTTGTAAAGGATGCAATCTGCAACAACCA
genomic: GCAACCCTGTTATTGGCAACTCTTCCTAAGTCATTGCCTTGCAGAGATAAgtatgtttat ... ctcatatcagAGAAATGGATGAGATATCAATATTTGTAAAGGATGCAATCTGCAACAACCA