1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGCCGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTGgtatgaataatacttacactgtggctgtcttatgcactccagtttataatttgtatgcttttgtcgtgacttaatgattaatcacgatgtgatgatgtag
species | Zea mays |
transcript | GRMZM2G168176_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTG TTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGAAAGGGTCACEST: gi|211512372|gb|FL212647.1|FL212647
genomic: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTGgtatgaataa ... gatgatgtagTTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGAAAGGGTCAC
EST: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTG TTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGNAAGGGTCACEST: gi|148943696|gb|EC888763.2|EC888763
genomic: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTGgtatgaataa ... gatgatgtagTTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGAAAGGGTCAC
EST: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTG TTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGAAAGGGTCACEST: gi|76289778|gb|DV029346.1|DV029346
genomic: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTGgtatgaataa ... gatgatgtagTTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGAAAGGGTCAC
EST: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTG TTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGAAAGGGTCACEST: gi|76285403|gb|DV024971.1|DV024971
genomic: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTGgtatgaataa ... gatgatgtagTTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGAAAGGGTCAC
EST: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTG TTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGAAAGGGTCACEST: gi|71325419|gb|DR799392.1|DR799392
genomic: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTGgtatgaataa ... gatgatgtagTTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGAAAGGGTCAC
EST: GATGGTGAAGCCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTG TTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGAAAGGGTCACEST: gi|71307148|gb|DR789745.1|DR789745
genomic: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTGgtatgaataa ... gatgatgtagTTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGAAAGGGTCAC
EST: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTG TTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGAAAGGGTCACEST: gi|28930902|gb|CB334263.1|CB334263
genomic: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTGgtatgaataa ... gatgatgtagTTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGAAAGGGTCAC
EST: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTG TTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTEST: gi|89759058|gb|DY688001.1|DY688001
genomic: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTGgtatgaataa ... gatgatgtagTTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCT
EST: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTG TTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGAAAGGGTCACEST: gi|6827088|gb|AW330731.1|AW330731
genomic: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTGgtatgaataa ... gatgatgtagTTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGAAAGGGTCAC
EST: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTG TTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGAAAGGGTCACEST: gi|76283913|gb|DV023481.1|DV023481
genomic: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTGgtatgaataa ... gatgatgtagTTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGAAAGGGTCAC
EST: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTG TTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGAAAGGGTCACEST: gi|78180563|gb|DV550891.1|DV550891
genomic: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTGgtatgaataa ... gatgatgtagTTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGAAAGGGTCAC
EST: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTG TTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGAAAGGGTCACEST: gi|32945542|gb|CF050361.1|CF050361
genomic: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTGgtatgaataa ... gatgatgtagTTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGAAAGGGTCAC
EST: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTG TTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGAAAGGGTCACEST: gi|18659405|gb|BM500320.1|BM500320
genomic: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTGgtatgaataa ... gatgatgtagTTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGAAAGGGTCAC
EST: GATGGNGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTG TTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGAAAGGGTCAC
genomic: GATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTGgtatgaataa ... gatgatgtagTTCACACCATGGAGGAGTTGAAGCTTACGGGTAACCATCTGAAAGGGTCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCCGAAAACAGAAGGATCTTTACCTTTGGATGGTGAAGTCTCCTGGAGGACCATCAGTGAAATTTCTAGTTAATGCTGgtatgaataatacttacactgtggctgtcttatgcactccagtttataatttgtatgcttttgtcgtgacttaatgattaatcacgatgtgatgatgtag
- - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG