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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTTTCACTTCGTTGACCAAGAACATGTGCAGCCTGCGCCAGTGATTGCTCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagttcaaatatttggctgatgaagcatcctcaataaaaacttagaagttgcacctattttagtctttttaaaattatgttgattgactgagat...

Basic information

species Zea mays
transcript GRMZM2G167932_T02
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211111778|gb|FL138558.1|FL138558
EST:     TCANGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGA
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGA
EST: gi|211274815|gb|FL138601.1|FL138601
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCA
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCA
EST: gi|211282056|gb|FL138668.1|FL138668
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCT
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCT
EST: gi|149112419|gb|EE295299.2|EE295299
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
EST: gi|6021363|gb|AW066291.1|AW066291
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAA
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAA
EST: gi|211109951|gb|FL138537.1|FL138537
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAA
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAA
EST: gi|14997053|gb|BI319142.1|BI319142
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGA
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGA
EST: gi|20507160|gb|BQ279512.1|BQ279512
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
EST: gi|211168273|gb|FL426169.1|FL426169
EST:     TCAGGAAGACTACNAGAGCANTTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAA
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAA
EST: gi|211109940|gb|FL138526.1|FL138526
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTC
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTC
EST: gi|211273012|gb|FL138594.1|FL138594
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCATGAGGAAGAAGCTCAACAAATAGGCAC-TGAAG
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAG-CACCTGAAG
EST: gi|31441042|gb|CD510473.1|CD510473
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
EST: gi|211280252|gb|FL138657.1|FL138657
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
EST: gi|211112699|gb|FL138575.1|FL138575
EST:     TCANGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGG
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGG
EST: gi|211276641|gb|FL138624.1|FL138624
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
EST: gi|211282053|gb|FL138665.1|FL138665
EST:     CAGGAAGACTACGAGAGCAATTTGGCACCCCACACAGTTNGT-GAGACCG                         CTCCTGAGTACGTTCACGAGGAA
genomic: CAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTT-GTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAA
EST: gi|211111776|gb|FL138556.1|FL138556
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTC
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTC
EST: gi|211278446|gb|FL138639.1|FL138639
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCATGAGGA
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGA
EST: gi|211283871|gb|FL138685.1|FL138685
EST:     CAGGAAGACTACGAGAGCAATTTGGCACCCCACACAGTTTGT-GAGACCG                         CTCCTGAGTACGTTCACGAGGGAGAAGGCTCA-CAAATAGCACCTGGAGTA
genomic: CAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTT-GTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAG-CTCAACAAATAGCACCTGAAGTA
EST: gi|211273013|gb|FL138595.1|FL138595
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGC
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGC
EST: gi|5268439|gb|AI770403.1|AI770403
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
EST: gi|211112694|gb|FL138570.1|FL138570
EST:     TCAGGAAGACTACNAGAGCAATTTGGCACCCA-CACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTTGA-GTA
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCT-GAAGTA
EST: gi|211110867|gb|FL138551.1|FL138551
EST:     CAGGAAGACTACGAGAGCA-TTTGGCACCCNACACAGTTTGT-GAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAAGCTCA-CAA-TAGCACCTGAAGTA
genomic: CAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTT-GTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAA-GCTCAACAAATAGCACCTGAAGTA
EST: gi|67037474|gb|CO464288.1|CO464288
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAAGAAGAAGCTCAACAAATAGCACCTGAAGTAC
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
EST: gi|20507148|gb|BQ279507.1|BQ279507
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGGTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGGAC
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
EST: gi|211283870|gb|FL138684.1|FL138684
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTT
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTT
EST: gi|211274824|gb|FL138610.1|FL138610
EST:     CAGGAAGACTACGAGAGCAAATTTG-CACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAG
genomic: CAGGAAGACTACGAGAGCAA-TTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAG
EST: gi|28566461|gb|CB278109.1|CB278109
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAATACGT
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGT
EST: gi|211112706|gb|FL138582.1|FL138582
EST:     CAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGAACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGA
genomic: CAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGA-CCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGA
EST: gi|78179030|gb|DV549403.1|DV549403
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
EST: gi|26457113|gb|CA828696.1|CA828696
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGCTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
EST: gi|211280239|gb|FL138644.1|FL138644
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGA-GCTCAACAA-TAGCACC
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACC
EST: gi|211453728|gb|FL371699.1|FL371699
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
EST: gi|26457000|gb|CA828583.1|CA828583
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
EST: gi|34391229|gb|CF384457.1|CF384457
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
EST: gi|211278443|gb|FL138636.1|FL138636
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         TTCCTGAGTACGTTTCACGAGGAAGAAG-TCAACAA-TAGCACC
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTT-CACGAGGAAGAAGCTCAACAAATAGCACC
EST: gi|211278441|gb|FL138634.1|FL138634
EST:     TCANGAAGACTACGAGAGCAATTTGCCACCCAACACAGTTGNTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
EST: gi|22818952|gb|BU499042.1|BU499042
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAA
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAA
EST: gi|32909310|gb|CF014122.1|CF014122
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
EST: gi|6964718|gb|AW433411.1|AW433411
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCANCAAATAGCACCTGAAGTAC
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
EST: gi|211280241|gb|FL138646.1|FL138646
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGA
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGA
EST: gi|211112697|gb|FL138573.1|FL138573
EST:     TCANGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
EST: gi|12046444|gb|BF728583.1|BF728583
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTAC
EST: gi|211336559|gb|FL394809.1|FL394809
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAG
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAG
EST: gi|211276631|gb|FL138614.1|FL138614
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAG
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAG
EST: gi|211112705|gb|FL138581.1|FL138581
EST:     CAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGAACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTA
genomic: CAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGA-CCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTA
EST: gi|211273003|gb|FL138585.1|FL138585
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACC
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACC
EST: gi|211111782|gb|FL138562.1|FL138562
EST:     TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCG                         CTCCTGAGTACGTTCACGAGGAAGAA
genomic: TCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 431

TACTTTCACTTCGTTGACCAAGAACATGTGCAGCCTGCGCCAGTGATTGCTCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTACATGATGTGGTCGAAAACTATACTTATTCTGAGCCACAACAGCAAGTAGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 357

TACTTTCACTTCGTTGACCAAGAACATGTGCAGCCTGCGCCAGTGATTGCTCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTACATGATGTGGTCGAAAACTATACTTATTCTGAGCCACAACAGCAAGTAGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 263

TACTTTCACTTCGTTGACCAAGAACATGTGCAGCCTGCGCCAGTGATTGCTCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTACATGATGTGGTCGAAAACTATACTTATTCTGAGCCACAACAGCAAGTAGT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 236

TACTTTCACTTCGTTGACCAAGAACATGTGCAGCCTGCGCCAGTGATTGCTCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagt ... ttgcctgcagCTCCTGAGTACGTTCACGAGGAAGAAGCTCAACAAATAGCACCTGAAGTACATGATGTGGTCGAAAACTATACTTATTCTGAGCCACAACAGCAAGTAGT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACTTTCACTTCGTTGACCAAGAACATGTGCAGCCTGCGCCAGTGATTGCTCAGGAAGACTACGAGAGCAATTTGGCACCCAACACAGTTGTTGAGACCGgtatggaagttcaaatatttggctgatgaagcatcctcaataaaaacttagaagttgcacctattttagtctttttaaaattatgttgattgactgagat

- - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaaa