1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAGgtaaaatttatatgttatttactggattgggtgcgcctggagtttgatttgtctagttcggttcttcagatattttggatgctaaaataaaggtgctccc...
species | Zea mays |
transcript | GRMZM2G167356_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAG AATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAAEST: gi|9255383|gb|BE345851.1|BE345851
genomic: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAGgtaaaattta ... ttgtatgtagAATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAA
EST: GAAGATTCTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAG AATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAAEST: gi|148946214|gb|EC891510.2|EC891510
genomic: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAGgtaaaattta ... ttgtatgtagAATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAA
EST: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAG AATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAAEST: gi|211107234|gb|FL370789.1|FL370789
genomic: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAGgtaaaattta ... ttgtatgtagAATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAA
EST: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAG AATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAAEST: gi|148932748|gb|EE285380.2|EE285380
genomic: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAGgtaaaattta ... ttgtatgtagAATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAA
EST: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAG AATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAAEST: gi|148939672|gb|EC884331.2|EC884331
genomic: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAGgtaaaattta ... ttgtatgtagAATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAA
EST: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAG AATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAAEST: gi|148935082|gb|EC879124.2|EC879124
genomic: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAGgtaaaattta ... ttgtatgtagAATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAA
EST: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAG AATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAAEST: gi|78116552|gb|DV534939.1|DV534939
genomic: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAGgtaaaattta ... ttgtatgtagAATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAA
EST: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAG AATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAAEST: gi|71439287|gb|DR820337.1|DR820337
genomic: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAGgtaaaattta ... ttgtatgtagAATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAA
EST: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAG AATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAAEST: gi|211449696|gb|FL381428.1|FL381428
genomic: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAGgtaaaattta ... ttgtatgtagAATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAA
EST: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAG AATCATTCTCCAAGCATTTTGAGAAGTEST: gi|211319685|gb|FL416782.1|FL416782
genomic: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAGgtaaaattta ... ttgtatgtagAATCATTCTCCAAGCATTTTGAGAAGT
EST: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAG AATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAAEST: gi|78108850|gb|DV527267.1|DV527267
genomic: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAGgtaaaattta ... ttgtatgtagAATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAA
EST: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAG AATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAAEST: gi|71427627|gb|DR808677.1|DR808677
genomic: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAGgtaaaattta ... ttgtatgtagAATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAA
EST: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAG AATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAAEST: gi|71432722|gb|DR813772.1|DR813772
genomic: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAGgtaaaattta ... ttgtatgtagAATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAA
EST: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAG AATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAAEST: gi|78076701|gb|DV505135.1|DV505135
genomic: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAGgtaaaattta ... ttgtatgtagAATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAA
EST: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAG AATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAA
genomic: GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAGgtaaaattta ... ttgtatgtagAATCATTCTCCAAGCATTTTGAGAAGTATGGGGCAATAACTGATTCTGTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGATTTTTGTCGGAGGCGTTGCTTGGGAGACAACTGAAGgtaaaatttatatgttatttactggattgggtgcgcctggagtttgatttgtctagttcggttcttcagatattttggatgctaaaataaaggtgctccc
- - - - - - - - - - - - - - - - - CTGAAG