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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGAAAGAATGAATTCTGGTGTGATGGTTGTTGAACCCTCTGAAACTCTTTTCAATGATATGATCAAAAAAATGGATCAATTGCCTTCTTACACAGGAGgtcagtgctcttcttttcttctgtgtgttcctttttttagataacataattcctttctgagaaggccatagtactagtcaaaatattcccttttatttat...

Basic information

species Zea mays
transcript GRMZM2G166903_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G166903_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g43700.1 (Oryza sativa), 5'ss of exon 3
TCTGAAAGAATGAATTCTGGTGTGATGGTTGTTGAACCCTCTGAAACTCTTTTCAATGATATGATCAAAAAAATGGATCAATTGCCTTCTTACACAGGAGgtcagtgctcttcttttcttctgtgtgttcctttttttagataacataattcctttctgagaaggccatagtactagtcaaaatattcccttttatttat-
|||||||||||||||||||| ||||||||||| ||||| ||||||||| ||||||| ||||||||     |||| ||    |||||||||||||| |||||||||||| ||| |||  |    |   || ||  |   |  ||| || | || |              || |  ||  |  | ||| |   | |   |   
TCTGAAAGAATGAATTCTGGAGTGATGGTTGTAGAACCATCTGAAACTGTTTTCAAGGATATGATGCGCCAAATAGACACTTTGCCTTCTTACACCGGAGgtcagtgcacttatttcttatgattcatttctaatacaaactaagattagtcatactccta-----tctaattttaaccggattatacttatatgcctcag

upper sequence: GRMZM2G166903_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g41520.1 (Oryza sativa), 5'ss of exon 3
TCTGAAAGAATGAATTCTGGTGTGATGGTTGTTGAACCCTCTGAAACTCTTTTCAATGATATGATCAAAAAAATGGATCAATTGCCTTCTTACACAGGAGgtcagtgctcttcttttcttc---tgtgtgttccttttt---ttagataac-ataattcctttctgagaaggccatagtactagtcaaaatattcccttttatttat
|||||||| ||||||||||| || |||||||| || || |||||||||||||||||||| |||||  | ||| |  |    || |||||||||||||||||| ||| |  ||| || |||    ||  ||||| || |     || |||   |||  |  ||  | |   ||    | || | | ||  | | |  | ||       
TCTGAAAGGATGAATTCTGGAGTAATGGTTGTAGAGCCATCTGAAACTCTTTTCAATGACATGATGGACAAAGTAAACAGTTTACCTTCTTACACAGGAGgttagtacaattcgttacttagcatgcttgttctttctggggctatatacttatatgtttttcttaactgggttgaactatttgacagcaaaatttcatt-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149085755|gb|EE175275.2|EE175275
EST:     TTTCAATGATATGATCNNNNNNNTGGATCAATTGCCTTCTTACACAGGAG                         GGGACCAAGGTTTTCTAAATTCATATTATTCTGATTTTGCCAACTCCCGTG
genomic: TTTCAATGATATGATCAAAAAAATGGATCAATTGCCTTCTTACACAGGAGgtcagtgctc ... tttcatgcagGGGACCAAGGTTTTCTAAATTCATATTATTCTGATTTTGCCAACTCCCGTG
EST: gi|148938164|gb|EC882444.2|EC882444
EST:     TTTCAATGATATGATCNNNNNNNTGGATCAATTGCCTTCTTACACAGGAG                         GGGACCAAGGTTTTCTAAATTCATATTATTCTGATTTTGCCAACTCCCGTG
genomic: TTTCAATGATATGATCAAAAAAATGGATCAATTGCCTTCTTACACAGGAGgtcagtgctc ... tttcatgcagGGGACCAAGGTTTTCTAAATTCATATTATTCTGATTTTGCCAACTCCCGTG
EST: gi|89760628|gb|DY688960.1|DY688960
EST:     TTTCAATGATATGATCNNNNNNNTGGATCAATTGCCTTCTTACACAGGAG                         GGGACCAAGGTTTTCTAAATTCATATTATTCTGATTTTGCCAACTCCCGTG
genomic: TTTCAATGATATGATCAAAAAAATGGATCAATTGCCTTCTTACACAGGAGgtcagtgctc ... tttcatgcagGGGACCAAGGTTTTCTAAATTCATATTATTCTGATTTTGCCAACTCCCGTG
EST: gi|50326138|gb|CO521264.1|CO521264
EST:     TTTCAATGATATGATCNNNNNNNTGGATCAATTGCCTTCTTACACAGGAG                         GGGACCAAGGTTTTCTAAATTCATATTATTCTGATTTTGCCAACTCCCGTG
genomic: TTTCAATGATATGATCAAAAAAATGGATCAATTGCCTTCTTACACAGGAGgtcagtgctc ... tttcatgcagGGGACCAAGGTTTTCTAAATTCATATTATTCTGATTTTGCCAACTCCCGTG
EST: gi|76294267|gb|DV033835.1|DV033835
EST:     TTTCAATGATATGATCNNNNNNNTGGATCAATTGCCTTCTTACACAGGAG                         GGGACCAAGGTTTTCTAAATTCATATTATTCTGATTTTGCCAACTCCCGTG
genomic: TTTCAATGATATGATCAAAAAAATGGATCAATTGCCTTCTTACACAGGAGgtcagtgctc ... tttcatgcagGGGACCAAGGTTTTCTAAATTCATATTATTCTGATTTTGCCAACTCCCGTG