Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAACTTAAAAGACGCCGTCAACATCCCGTCCAGAACCCTTGACTGCCGAGGTTGCTGTGCTGGCTTCTTTTGCCCTCATGGGCTCACTTGCATGATACgtaagtaataggaagcctagctactgccctcagcatgtcctgccagcaataatggtcttgtgatatatatatatctatctattcacttcacag

Basic information

species Zea mays
transcript GRMZM2G166889_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G166889_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os06g51460.2 (Oryza sativa), 5'ss of exon 3
GTCAACTTAAAAGACGCCGTCAACATCCCGTCCAGAACCCTTGACTGCCGAGGTTGCTGTGCTGGCTTCTTTTGCCCTCATGGGCTCACTTGCATGATACgtaagtaatagga-agcctag-ctactgccc-----tcagcatgtcctgccagcaataatggtcttgtg-atatatata-tatctatctattcacttcacag
 |||||||  | || ||||||||| |||| |||||||| ||||| |||||||| ||||||||||| ||||| |||||||| || ||||||||||||||||||| | | |     || |||  |||    ||     ||| ||| ||||| ||   | ||   |   ||  || ||| || || | |     | | || |   
ATCAACTTGCAGGATGCCGTCAACTTCCCTTCCAGAACACTTGATTGCCGAGGCTGCTGTGCTGGATTCTTCTGCCCTCACGGCCTCACTTGCATGATACgtacgcattctactagtctactctatcatccatgcatcatcatatcctgtcaattaaaaaaattgcgtacatgtatgtaataccaagagtattaattaat--

upper sequence: GRMZM2G166889_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA11G20220.1 (Glycine max), 5'ss of exon 1
GTCAACTTAAAAGACGCCGTCAACATCCCGTCCAGAACCCTTGACTGCCGAGGTTGCTGTGCTGGCTTCTTTTGCCCTCATGGGCTCACTTGCATGATACgtaagtaataggaagcctagctactgccctcagcatgtcctgccagcaat-aatggtcttgtgatatatatatatctatctattcacttcacag------------
| ||     |   ||        ||| ||   |||| || |||| |||| |  ||| ||||  |||||||||||||||||||| |||||||||||||| |||||||| ||       ||   ||   |   | ||  ||    ||  ||| | |  | || |  | | | ||| | |  |  |     ||                
GACATTGGTAGTCACAAGAAGGGCATACCTATCAGATCCGTTGATTGCCAACCTTGTTGTGAAGGCTTCTTTTGCCCTCATGGTCTCACTTGCATGATCCgtaagtatta-----tttatgcacatacaagaaca-atcacaacactaattagttttttttttctctctgtatttttgcccttcattgtcgtgtgctctacctact

upper sequence: GRMZM2G166889_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA20G32210.1 (Glycine max), 5'ss of exon 3
GTCAACTTAAAAGACGCCGTCAACATCCCGTCCAGAACCCTTGACTGCCGAGGTTGCTGTGCTGGCTTCTTTTGCCCTCATGGGCTCACTTGCATGATACgtaagta------ataggaagcct--agctactgccctcagcatgtcctgccagcaataatggtcttgtgatatatatatatctatctattcacttcacag
||  || | ||| || |     | || ||  | |||||     | || | ||  || ||||  ||||||||||| ||||||||| | || |||||||||||||||||      || |||| | |  |  | ||  | |||  |     | |    ||||       |  |||| |||||| | |||  | |   |    | 
GTTGACCTTAAAAACTCAAAGGAGATACCTGCAAGAACTTCGAATTGTCAAGCATGTTGTGAAGGCTTCTTTTGTCCTCATGGGATTACATGCATGATACgtaagtataatgaatgggaatcttcaaaattctttcttcattacagattactgcaaatagcttctataggata-atatatttttattcaatttttaagtat

upper sequence: GRMZM2G166889_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA12G08290.1 (Glycine max), 5'ss of exon 1
GTCAACTTAAAAGACGCCGTCAACATCCCGTCCAGAACCCTTGACTGCCGAGGTTGCTGTGCTGGCTTCTTTTGCCCTCATGGGCTCACTTGCATGATACgtaagtaataggaa-gcctagctactgccctcagcatgtcctgccagcaataatggtct-tgtgatatatatat--atctatctattcacttcacag---
| ||     |   ||       |||| ||    ||| ||||||| || | |  ||| ||||  |||||||||||||||||||| ||||||||||||||||||||||| ||   | ||  |   |          ||   |     |    || |  ||| |||  | |    ||  ||  |  |||   || |  |    
GACATTGGTAGTAACAAAAAGGACATACCTATTAGATCCCTTGATTGTCAACCTTGTTGTGAAGGCTTCTTTTGCCCTCATGGTCTCACTTGCATGATACgtaagtattatttatgcgcatacaacaaaagttacaaaactaattatttttatttttctatgtacttttgccattgattgacgtatgttctaccgaagat

upper sequence: GRMZM2G166889_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA10G35310.1 (Glycine max), 5'ss of exon 3
GTCAACTTAAAAGACGCCGTCAACATCCCGTCCAGAACCCTTGACTGCCGAGGTTGCTGTGCTGGCTTCTTTTGCCCTCATGGGCTCACTTGCATGATACgtaagtaataggaagcctagctactgccctcagcatgtc-ctgccagcaataatggtcttgtgatatatatatatctatctattcacttcacag------
||  || | ||| |  |     | || ||  | |||||  |  | || | ||  || ||||  ||||||||||| ||||||||| | || |||||||||||||||||  | |||    |     | |  |||   | || || |     |           |  ||||   || | |||  |     |   ||       
GTTGACCTCAAAAATTCAAAGGAGATACCCGCAAGAACTTTGAATTGTCAAGCCTGTTGTGAAGGCTTCTTTTGTCCTCATGGGATTACATGCATGATACgtaagtataatgaataagattctttacaatcactttttcactacagatgactgcaaatagcttctataccaatttttattcaacttttaagcatcttcaa

upper sequence: GRMZM2G166889_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv13s0019g04600.t01 (Vitis vinifera), 5'ss of exon 3
GTCAACTTAAAAGACGCCGTCAACATCCCGTCCAGAACCCTTGACTGCCGAGGTTGCTGTGCTGGCTTCTTTTGCCCTCATGGGCTCACTTGCATGATACgtaagtaataggaagcctagctactgccctcagcatgtc--ctgccagcaa--taatggtcttgtgatat-atatatatctatctattcac--ttcacag
|| ||| | ||| |  |    ||||| ||  ||||||| | ||| || |  | ||| ||||  || ||||| ||||||| |||  |||||||||||||||||||||| |  |||  ||    | |        |||     |||  |||||  | ||| | ||     ||  | | |  || |  |       ||  || 
GTTAACCTTAAAAATTCACAGAACATTCCTACCAGAACTCATGATTGTCAGGCTTGTTGTGAGGGTTTCTTCTGCCCTCGTGGTATCACTTGCATGATACgtaagtattgagaattcttttaattctttgttacataatgactgaaagcaactttatgattttacttcattgtttgtggcttttgagaagtgattggcat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21330557|gb|BQ485938.1|BQ485938
EST:     AGGTTGCTGTGCTGGCTTCTTTTGCCCTCATGGGCTCACTTGCATGATAC                         CATGTCCTCTGGGAGCCTACTGCCCTCAGTCCACTCTG
genomic: AGGTTGCTGTGCTGGCTTCTTTTGCCCTCATGGGCTCACTTGCATGATACgtaagtaata ... cacttcacagCATGTCCTCTGGGAGCCTACTGCCCTCAGTCCACTCTG