1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACCAGCGAACGATGAGAAGAGTCTGCAGAAGGCAGTTGCAAACCAGCCTGTCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCGgtaattggcgctcaccttgctgctgggttcatctgtggaccatttggttaaagtccgagatgaatgattcaatcatctagtgtttgattattagttggtg...
species | Zea mays |
transcript | GRMZM2G166281_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCG GGTATCTTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCCEST: gi|13515985|gb|BG518261.1|BG518261
genomic: TCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCGgtaattggcg ... ctggcctcagGGTATCTTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCC
EST: TCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCG GGTATCTTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCCEST: gi|32923037|gb|CF027849.1|CF027849
genomic: TCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCGgtaattggcg ... ctggcctcagGGTATCTTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCC
EST: TCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCG GGTATCTTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCCEST: gi|18649519|gb|BM498338.1|BM498338
genomic: TCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCGgtaattggcg ... ctggcctcagGGTATCTTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCC
EST: TCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCG GGTATCTTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCCEST: gi|18170436|gb|BM340276.1|BM340276
genomic: TCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCGgtaattggcg ... ctggcctcagGGTATCTTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCC
EST: TCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCG GGTATCTTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCCEST: gi|32923298|gb|CF028110.1|CF028110
genomic: TCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCGgtaattggcg ... ctggcctcagGGTATCTTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCC
EST: TCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCG GGTATCTTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCCEST: gi|7958403|gb|AW862705.1|AW862705
genomic: TCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCGgtaattggcg ... ctggcctcagGGTATCTTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCC
EST: TCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCG GGTATATTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCCEST: gi|32843840|gb|CD983521.1|CD983521
genomic: TCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCGgtaattggcg ... ctggcctcagGGTATCTTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCC
EST: TCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCG GGTATCTTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCCEST: gi|71444254|gb|DR825304.1|DR825304
genomic: TCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCGgtaattggcg ... ctggcctcagGGTATCTTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCC
EST: TCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCG GGTATCTTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCCEST: gi|18172588|gb|BM347976.1|BM347976
genomic: TCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCGgtaattggcg ... ctggcctcagGGTATCTTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCC
EST: TCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCG GGTATCTTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCCEST: gi|8102925|gb|AW927598.1|AW927598
genomic: TCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCGgtaattggcg ... ctggcctcagGGTATCTTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCC
EST: TCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCG GGTATATTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCCEST: gi|13490779|gb|BG517543.1|BG517543
genomic: TCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCGgtaattggcg ... ctggcctcagGGTATCTTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCC
EST: GCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCG GGTATCTTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCCEST: gi|22489668|gb|BU049578.1|BU049578
genomic: GCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCGgtaattggcg ... ctggcctcagGGTATCTTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCC
EST: TCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCG GGTATCTTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCCEST: gi|211384516|gb|FL378678.1|FL378678
genomic: TCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCGgtaattggcg ... ctggcctcagGGTATCTTCACTGGAAGCTGTGGAACAGCGCTGGACCATGGTGTCACGGCC
EST: AGTGTCGCAATTTGAG-CTGGCTG-CACAGCATTTCAGCTCTACAGCTCG GGTATCTTCACTGGGAGCTGTG
genomic: AGTGTCGCAATT-GAGGCTG-CTGGCACAGCATTTCAGCTCTACAGCTCGgtaattggcg ... ctggcctcagGGTATCTTCACTGGAAGCTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCAGCGAACGATGAGAAGAGTCTGCAGAAGGCAGTTGCAAACCAGCCTGTCAGTGTCGCAATTGAGGCTGCTGGCACAGCATTTCAGCTCTACAGCTCGgtaattggcgctcaccttgctgctgggttcatctgtggaccatttggttaaagtccgagatgaatgattcaatcatctagtgtttgattattagttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC