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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGGATTTATGGTAGCATTTGCTGGTAGGAAGTATGCAGCTAGATCAATCCCGATATTCGTATCCAACACCTCAGTTACAGTGTCCAGCTTCACCCTGgtacgaatcgataaacgcactaccatgtccgccatacctaaacacgtagcagacgagttccgaatcttactgctacttgacgacggacgattcttccgcag

Basic information

species Zea mays
transcript GRMZM2G166109_T04
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G166109_T04 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g44560.1 (Oryza sativa), 5'ss of exon 2
TGGTGGATTTATGGTAGCATTTGCTGGTAGGAAGTATGCAGCTAGATCAATCCCGATATTCGTATCCAACACCTCAGTTACAGTGTCCAGCTTCACCCTGgtacgaatcgataaacgcactaccatgtccgccatacctaaacacgtagcagacgagttccgaatcttactgctacttgacgacggacgattcttccgcag
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TGGTGGGTACATGGTAGCATTTGCCGGTAGGAAGTATGCAGCCCGGTCTGTTCCAACCTTTGTGTCCAATTCCTCATATACAGTCTCCAGCTTCACCCTGgtatggaaccaaagatgtaccactatgcccatcacctatcaacttgtgacacaaagaat---attcttaatgttgtctc-catctgatgatacttgtctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91877204|gb|EB407161.1|EB407161
EST:     TCCCGATATTCGTATCCAACACCTCAGTTACAGTGTCCAGCTTCACCCTG                         GTGCTCGAGTTCAACAAAGGCAGACTTGAAAACCTGCACTGGAAGAAGGAC
genomic: TCCCGATATTCGTATCCAACACCTCAGTTACAGTGTCCAGCTTCACCCTGgtacgaatcg ... tcttccgcagGTGCTCGAGTTCAACAAAGGCAGACTTGAAAACCTGCACTGGAAGAAGGAC
EST: gi|7145403|gb|AW506884.1|AW506884
EST:     T-CCGATATTCGTATCCAACACCTCAGTTACAGTGTCCAGCTTCACCCTG                         GTGCTCGAGTTCAACAAAGGCAGACTTCAAAACCTGCACTGGAAGAAGGAC
genomic: TCCCGATATTCGTATCCAACACCTCAGTTACAGTGTCCAGCTTCACCCTGgtacgaatcg ... tcttccgcagGTGCTCGAGTTCAACAAAGGCAGACTTGAAAACCTGCACTGGAAGAAGGAC
EST: gi|20802580|gb|BQ293630.1|BQ293630
EST:     T-CCGATATTCGTATCCAACACCTCAGTTACAGTGTCCAGCTTCACCCTG                         GTGCTCGAGTTCAACAAAGGCAGACTTCAAAACCTGCACTGGAAGAAGGAC
genomic: TCCCGATATTCGTATCCAACACCTCAGTTACAGTGTCCAGCTTCACCCTGgtacgaatcg ... tcttccgcagGTGCTCGAGTTCAACAAAGGCAGACTTGAAAACCTGCACTGGAAGAAGGAC
EST: gi|89247132|gb|DY618918.1|DY618918
EST:     TCCCGATATTCGTATCCAACACCTCAGTTACAGTGTCCAGCTTCACCCTG                         GTGCTCGAGTTCAACAAAGGCAGACTTGAAAACCTGCACTGGAAGAAGGAC
genomic: TCCCGATATTCGTATCCAACACCTCAGTTACAGTGTCCAGCTTCACCCTGgtacgaatcg ... tcttccgcagGTGCTCGAGTTCAACAAAGGCAGACTTGAAAACCTGCACTGGAAGAAGGAC
EST: gi|211291364|gb|FL223338.1|FL223338
EST:     T-CCGATATTCGTATCCAACACCTCAGTTACAGTGTCCAGCTTCACCCTG                         GTGCTCGAGTTCAACAAAGGCAGACTTCAAAACCTGCACTGGAAGAAGGAC
genomic: TCCCGATATTCGTATCCAACACCTCAGTTACAGTGTCCAGCTTCACCCTGgtacgaatcg ... tcttccgcagGTGCTCGAGTTCAACAAAGGCAGACTTGAAAACCTGCACTGGAAGAAGGAC
EST: gi|22542562|gb|BU093000.1|BU093000
EST:     T-CCGATATTCGTATCCAACACCTCAGTTACAGTGTCCAGCTTCACCCTG                         GTGCTCGAGTTCAACAAAGGCAGACTTCAAACCCTGCACTGGAAGAAGGAC
genomic: TCCCGATATTCGTATCCAACACCTCAGTTACAGTGTCCAGCTTCACCCTGgtacgaatcg ... tcttccgcagGTGCTCGAGTTCAACAAAGGCAGACTTGAAAACCTGCACTGGAAGAAGGAC
EST: gi|93016871|gb|EB642391.1|EB642391
EST:     TCCCGATATTGGTATCCAACACCTCAGTTACAGTGTCCAGCTTCACCCTG                         GTGCTCGAGTTCAACAAAGGCAGACTTGAAAACCTGCACTGGAAGAAGGAC
genomic: TCCCGATATTCGTATCCAACACCTCAGTTACAGTGTCCAGCTTCACCCTGgtacgaatcg ... tcttccgcagGTGCTCGAGTTCAACAAAGGCAGACTTGAAAACCTGCACTGGAAGAAGGAC
EST: gi|211086590|gb|FL454742.1|FL454742
EST:     T-CCGATATTCGTATCCAACACCTCAGTTACAGTGTCCAGCTTCACCCTG                         GTGCTCGAGTTCAACAAAGGCAGACTTCAAAACCTGCACTGGAAGAAGGAC
genomic: TCCCGATATTCGTATCCAACACCTCAGTTACAGTGTCCAGCTTCACCCTGgtacgaatcg ... tcttccgcagGTGCTCGAGTTCAACAAAGGCAGACTTGAAAACCTGCACTGGAAGAAGGAC
EST: gi|148936159|gb|EC880227.2|EC880227
EST:     TCCCGATATTCGTATCCAACACCTCAGTTACAGTGTCCAGCTTCACCCTG                         GTGCTCGAGTTCAACAAAGGCAGACTTGAAAACCTGCACTGGAAGAAGGAC
genomic: TCCCGATATTCGTATCCAACACCTCAGTTACAGTGTCCAGCTTCACCCTGgtacgaatcg ... tcttccgcagGTGCTCGAGTTCAACAAAGGCAGACTTGAAAACCTGCACTGGAAGAAGGAC
EST: gi|148936160|gb|EC880228.2|EC880228
EST:     AGTATGCAGCTAGATCAATCCCGATATTCGTATCCAACACCTCAGTTACAGTGTCCAGCTTCACCCTG        
genomic: TCCCGATATTCGTATCCAACACCTCAGTTACAGTGTCCAGCTTCACCCTGgtacgaatcg ... tcttccgcagG
EST: gi|101396413|gb|EB820133.1|EB820133
EST:     CAGTTACAGTGTCCAGCTTCACCCTG                         GTGCTCGAGTTCAACAAAGGCAGACTTGAAAACCTGCACTGGAAGAAGGAC
genomic: CAGTTACAGTGTCCAGCTTCACCCTGgtacgaatcg ... tcttccgcagGTGCTCGAGTTCAACAAAGGCAGACTTGAAAACCTGCACTGGAAGAAGGAC