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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACGGAGGAGTCAGAGCAGCTGAGTACGTTAAGCAGCATCTTTTCAGCAATTTAATCAAACACCCAAAGTTCATCACTGATACCAAGGCCGCTATTGgtatgctcatactaactattgaggacttttgacttctacactgacatatgatggtcttgatatcctcccgtttttttttttttttgctgcag

Basic information

species Zea mays
transcript GRMZM2G166035_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G166035_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g05630.1 (Oryza sativa), 5'ss of exon 3
GTCACGGAGGAGTCAGAGCAGCTGAGTACGTTAAGCAGCATCTTTTCAGCAATTTAATCAAACACCCAAAGTTCATCACTGATACCAAGGCCGCTATTGgtatgctcatactaactattgaggacttttgacttctacactgacatatgatggtcttgatatc--ctcccgtttttttttttttttgctgcag
| || || ||||   |||| ||||| || || |||||||| ||||||||||||||||| || || ||||||||||||| ||||| |||| ||||||| ||||||     | |||  ||| | |  ||  |      | |      || |     ||  |       |    ||| | | |  ||||  |||||
GCCATGGCGGAGCTCGAGCGGCTGAATATGTCAAGCAGCACCTTTTCAGCAATTTAATTAAGCATCCAAAGTTCATCAGTGATATCAAGTCCGCTATCGgtatg---gcattaataattcatgcattacggagcaaaaataattgta-gccaacctaaaaggtggttgtgatttctctgtacttttcttgcag

upper sequence: GRMZM2G166035_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT5G10740.1 (Arabidopsis thaliana), 5'ss of exon 4
GTCACGGAGGAGTCAGAGCAGCTGAGTACGTTAAGCAGCATCTTTTCAGCAATTTAATCAAACACCCAAAGTTCATCACTGATACCAAGGCCGCTATTGgtatgctcatacta--actattgaggacttttgac-----ttctacactgacatatgatggtcttgatatcc-tcccgtttttttttttttttgctgcag
| || || |||| |||||||||||||||||| ||||  ||||||||||| ||| | ||||  ||||||||||| ||| |||| |||||  | |||||  |||   | | |  |  |  |   | |  |||| |      ||       ||   |  | |    | || | | | || |||| ||   | ||| |     
GCCATGGTGGAGCCAGAGCAGCTGAGTACGTGAAGCGCCATCTTTTCAGTAATCTGATCACCCACCCAAAGTTTATCTCTGACACCAAATCAGCTATAAgtactgtaaaaaaatcatgagcaaagcttttttaaaacaatttgttgtagatgcagcaggactctaatttacattccattttcttcaatgttttccag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19350739|gb|BM895271.1|BM895271
EST:     CAATTTAATCAAACACCCAAAGTTCATCACTGATACCAAGGCCGCTATTG                         CTGAAACTTACAACCGCACAGATTCAGAATTTCTGAAAGCTGATAGCACTC
genomic: CAATTTAATCAAACACCCAAAGTTCATCACTGATACCAAGGCCGCTATTGgtatgctcat ... tttgctgcagCTGAAACTTACAACCGCACAGATTCAGAATTTCTGAAAGCTGATAGCACTC
EST: gi|6826953|gb|AW330596.1|AW330596
EST:     CAATTTAATCAAACACCCAAAGTTCATCACTGATACCAAGGCCGCTATTG                         CTGAAACTTACAACCGCACAGATTCAGAATTTCTGAAAGCTGATAGCACTC
genomic: CAATTTAATCAAACACCCAAAGTTCATCACTGATACCAAGGCCGCTATTGgtatgctcat ... tttgctgcagCTGAAACTTACAACCGCACAGATTCAGAATTTCTGAAAGCTGATAGCACTC
EST: gi|31359010|gb|CD443367.1|CD443367
EST:     CAATTTAATCAAACACCCAAAGTTCATCACTGATACCAAGGCCGCTATTG                         CTGAAACTTACAACCGCACAGATTCAGAATTTCTGAAAGCTGATAGCACTC
genomic: CAATTTAATCAAACACCCAAAGTTCATCACTGATACCAAGGCCGCTATTGgtatgctcat ... tttgctgcagCTGAAACTTACAACCGCACAGATTCAGAATTTCTGAAAGCTGATAGCACTC