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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaataagtttatttttgggcacttgttgttttgttactctaccttgagtagcaaggtcaatacctattcaaagattcagactagtatgataagcatttttccttatgtag

Basic information

species Zea mays
transcript GRMZM2G165998_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165998_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g06620.1 (Oryza sativa), 5'ss of exon 3
AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaataagtttatttttgggcacttgttgttttgttactctaccttgagtagcaaggtcaatacctattcaaagattcagactagtatgataagcatttttccttatgtag
|  |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||             |||  | |||||||||    || |  |   ||   | ||||||| ||||    ||      | |||                               
AGTTAGGAATATTAAGCTGGCGCCTGAATGCTGATGACTGGGAGAATGATGAGAACCTCAAGAAAATCCGTGAGGCCAGGGGATACTCTTACATGgtttgca------------tttcagaacttgttgtgagtttccattttttttgttcgcaaggttaatatgcttttccttgtgcag-------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32916516|gb|CF021328.1|CF021328
EST:     ATGATGAGAACCTCAAGAAAATTCGGGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGGTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|32915127|gb|CF019939.1|CF019939
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|32910309|gb|CF015121.1|CF015121
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|211136266|gb|FL235028.1|FL235028
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|42491995|gb|CK701041.1|CK701041
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|32918894|gb|CF023706.1|CF023706
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|211137217|gb|FL235044.1|FL235044
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAA-TTACGAGGCTAGGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|211136272|gb|FL235034.1|FL235034
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|32858130|gb|CD997811.1|CD997811
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|5895571|gb|AW036817.1|AW036817
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|211136265|gb|FL235027.1|FL235027
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTKTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|32851451|gb|CD991132.1|CD991132
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|211136269|gb|FL235031.1|FL235031
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTTGTGATGTGTGCCCAGAGAAGTTGCCCAATTA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTT-GTGATGTGTGCCCAGAGAAGTTGCCAAATTA
EST: gi|32915396|gb|CF020208.1|CF020208
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|32910482|gb|CF015294.1|CF015294
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|31611894|gb|CD568516.1|CD568516
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|211137218|gb|FL235045.1|FL235045
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|9731247|gb|BE509999.1|BE509999
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|32916506|gb|CF021318.1|CF021318
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCCTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|32916207|gb|CF021019.1|CF021019
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|111990462|gb|EE331881.1|EE331881
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|74034874|gb|DT535365.1|DT535365
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|211135335|gb|FL235023.1|FL235023
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|211137219|gb|FL235046.1|FL235046
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|193502968|gb|AM938541.1|AM938541
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|40287017|gb|CK327409.1|CK327409
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|211137220|gb|FL235047.1|FL235047
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGAT
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTT-GTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGAT
EST: gi|211136278|gb|FL235040.1|FL235040
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|211137222|gb|FL235049.1|FL235049
EST:     GATGAGAACCTCAAGAAAATTCGTGAAGCCCAGGGGNTTACTCTTACATG                         GACCATTTTGTGATGTGCGCCC
genomic: GATGAGAACCTCAAGAAAATTCGTGAAGCC-AGGGG-TTACTCTTACATGgtttgctaat ... ccttatgtagGAC-ATTT-GTGATGTGTGCCC
EST: gi|32868008|gb|CF007690.1|CF007690
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|71770494|gb|DR968431.1|DR968431
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|211137225|gb|FL235052.1|FL235052
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|108824274|gb|EC278282.1|EC278282
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|21626225|gb|BQ621146.1|BQ621146
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|32933164|gb|CF037976.1|CF037976
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
EST: gi|32858765|gb|CD998446.1|CD998446
EST:     ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG                         GACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA
genomic: ATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1031

AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATAAAGAATTTCTTTGAAGAACACTTGCATACTGATGAAGAGATACGATATT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 4701

AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATAAAGAATTTCTTTGAAGAACACTTGCATACTGATGAAGAGATACGATATT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 6629

AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATAAAGAATTTCTTTGAAGAACACTTGCATACTGATGAAGAGATACGATATT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 3419

AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaat ... ccttatgtagGACATTTGTGATGTGTGCCCAGAGAAGTTGCCAAATTACGAGGCTAAGATAAAGAATTTCTTTGAAGAACACTTGCATACTGATGAAGAGATACGATATT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATGgtttgctaataagtttatttttgggcacttgttgttttgttactctaccttgagtagcaaggtcaatacctattcaaagattcagactagtatgataagcatttttccttatgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC