1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GATGGGATAGGTAAGAGCAACGGTGGTGGGAAGAGAGATGATAGACACAGGATGCGGCAGTACAGGTCGCAGCTCGAACAGGAGgtggatgatcctcttaagccctgtgatttgtttctcgctatgctgtaattgtgtcacctgatgcgattcaataaccctgtcaaaatcgtgcag
species | Zea mays |
transcript | GRMZM2G165945_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAGATGATAGACACAGGATGCGGCAGTACAGGTCGCAGCTCGAACAGGAG GTCAAGAAATTGCAGAGGCAGCTTGAAGAAGAGGTTGATCTGCACGTGGCGEST: gi|149078161|gb|EE166908.2|EE166908
genomic: GAGATGATAGACACAGGATGCGGCAGTACAGGTCGCAGCTCGAACAGGAGgtggatgatc ... aatcgtgcagGTCAAGAAATTGCAGAGGCAGCTTGAAGAAGAGGTTGATCTGCACGTGGCG
EST: GAGATGATAGACACAGGATGCGGCAGTACAGGTCGCAGCTCGAACAGGAG GTCAAGAAATTGCAGAGGCAGCTTGAAGAAGAGGTTGATCTGCACGTGGCGEST: gi|78087675|gb|DV516068.1|DV516068
genomic: GAGATGATAGACACAGGATGCGGCAGTACAGGTCGCAGCTCGAACAGGAGgtggatgatc ... aatcgtgcagGTCAAGAAATTGCAGAGGCAGCTTGAAGAAGAGGTTGATCTGCACGTGGCG
EST: GAGATGATAGACACAGGATGCGGCAGTACAGGTCGCAGCTCGAACAGGAG GTCAAGAAATTGCAGAGGCAGCTTGAAGAAGAGGTTGATCTGCACGTGGCGEST: gi|211090437|gb|FL069857.1|FL069857
genomic: GAGATGATAGACACAGGATGCGGCAGTACAGGTCGCAGCTCGAACAGGAGgtggatgatc ... aatcgtgcagGTCAAGAAATTGCAGAGGCAGCTTGAAGAAGAGGTTGATCTGCACGTGGCG
EST: GAGATGATAGACACAGGATGCGGCAGTACAGGTCGCAGCTCGAACAGGAG GTCAAGAAATTGCAGAGGCAGCTTGAAGAANAGGTTGATCTGCACGTGGCGEST: gi|211090433|gb|FL069853.1|FL069853
genomic: GAGATGATAGACACAGGATGCGGCAGTACAGGTCGCAGCTCGAACAGGAGgtggatgatc ... aatcgtgcagGTCAAGAAATTGCAGAGGCAGCTTGAAGAAGAGGTTGATCTGCACGTGGCG
EST: GAGATGATAGACACAGGATGCGGCAGTACAGGTCGCAGCTCGAACAGGAG GTCAAGAAATTGCAGAGGCAGCTTGAAGAAGAGGTTGATCTGCAEST: gi|211129018|gb|FL016633.1|FL016633
genomic: GAGATGATAGACACAGGATGCGGCAGTACAGGTCGCAGCTCGAACAGGAGgtggatgatc ... aatcgtgcagGTCAAGAAATTGCAGAGGCAGCTTGAAGAAGAGGTTGATCTGCA
EST: GAGATGATAGACACAGGATGCGGCAGTACAGGTCGCAGCTCGAACAGGAG GTCAAGAAATTGCAGAGGCAGCTTGAAGAAGAGGTTGATCTGCACGTGGCGEST: gi|211090439|gb|FL069859.1|FL069859
genomic: GAGATGATAGACACAGGATGCGGCAGTACAGGTCGCAGCTCGAACAGGAGgtggatgatc ... aatcgtgcagGTCAAGAAATTGCAGAGGCAGCTTGAAGAAGAGGTTGATCTGCACGTGGCG
EST: GAGATGATAGACACAGGATGCGGCAGTACAGGTCGCAGCTCGAACAGGAG GTCAAGAAATTGCAGAGGCAGCTTGAAGAAEST: gi|71308123|gb|DR790286.1|DR790286
genomic: GAGATGATAGACACAGGATGCGGCAGTACAGGTCGCAGCTCGAACAGGAGgtggatgatc ... aatcgtgcagGTCAAGAAATTGCAGAGGCAGCTTGAAGAA
EST: GAGATGATAGACACAGGATGCGGCAGTACAGGTCGCAGCTCGAACAGGAG GTCAAGAAATTGCAGAGGCAGCTTGAAGAAGAGGTTGATCTGCACGTGGCG
genomic: GAGATGATAGACACAGGATGCGGCAGTACAGGTCGCAGCTCGAACAGGAGgtggatgatc ... aatcgtgcagGTCAAGAAATTGCAGAGGCAGCTTGAAGAAGAGGTTGATCTGCACGTGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGGGATAGGTAAGAGCAACGGTGGTGGGAAGAGAGATGATAGACACAGGATGCGGCAGTACAGGTCGCAGCTCGAACAGGAGgtggatgatcctcttaagccctgtgatttgtttctcgctatgctgtaattgtgtcacctgatgcgattcaataaccctgtcaaaatcgtgcag
- - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC