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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTTCGCGTGCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcacatcgatcccaaaacattttctttactattgtgctgagagaatttttgccaattagtttagggattcagtgcaactgcttaatctgtcgcataagttgttagatcatggtacttgtagtttgcttaaccaagtaatgcacaacaatgtactatatag

Basic information

species Zea mays
transcript GRMZM2G165926_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165926_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g13970.1 (Oryza sativa), 5'ss of exon 3
CCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTTCGCGTGCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcacatcgatcccaaaacattttctttactattgtgctgagagaatttttgccaattagtttagggattcagtgc-aactgcttaatctgtcgcataagttgttagatcatggtacttgtagtttgcttaaccaagtaatgcacaacaatgtactatatag
|||||||||||||| ||||| ||||| |||||||| ||||| || |||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||| || || |||| | |||| |        |||| || | |  ||      ||| |     |       |  | |  || | || |  | ||| |||   || | ||  |                                                         
CCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTGCGCGTGCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTATGCACGgtgagttcccatcaaccccata--------tttagtactttagtggatatgtttgtagttgtagcagaggaaaatttgtaccaattagtcaatttgt---atgactttatg--------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211424106|gb|FL416822.1|FL416822
EST:     GCTTGTYACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211184475|gb|FL377616.1|FL377616
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|28987670|gb|CB351750.1|CB351750
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211022764|gb|FL415058.1|FL415058
EST:     TTGTTCACTCCCACCAGCGACCTCGGGAAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: TTGT-CACTCCCACCAGCGACCTCGGGAA-GATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211275084|gb|FL386564.1|FL386564
EST:     GCTTGTYACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211113040|gb|FL406956.1|FL406956
EST:     GCTTGTYACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211063824|gb|FL422604.1|FL422604
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211114756|gb|FL427457.1|FL427457
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211187018|gb|FL384708.1|FL384708
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211344022|gb|FL411922.1|FL411922
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCACTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211503963|gb|FL378777.1|FL378777
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGYTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211527200|gb|FL395771.1|FL395771
EST:     GCTTGTYACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211232447|gb|FL422709.1|FL422709
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211527211|gb|FL395782.1|FL395782
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211143208|gb|FL408627.1|FL408627
EST:     GCTTGTYACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211054284|gb|FL399893.1|FL399893
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGNTGCGGNAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211147697|gb|FL418240.1|FL418240
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211148658|gb|FL386501.1|FL386501
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211537119|gb|FL426923.1|FL426923
EST:     GCTTGTCACTCCCACCAGCGACCYCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCC-
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211527210|gb|FL395781.1|FL395781
EST:     GCTTGTYACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211307281|gb|FL401385.1|FL401385
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211408195|gb|FL391585.1|FL391585
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211011982|gb|FL416040.1|FL416040
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211263889|gb|FL391944.1|FL391944
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|34391254|gb|CF384482.1|CF384482
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211449452|gb|FL371660.1|FL371660
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|31664309|gb|CD573034.1|CD573034
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211296433|gb|FL375537.1|FL375537
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAAATCCAGGTTGCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAA-TCCAGGTTGCC
EST: gi|211305475|gb|FL415757.1|FL415757
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211316901|gb|FL369687.1|FL369687
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211092224|gb|FL378433.1|FL378433
EST:     TTGTCACTCCCACCAGCGACCTCNGGGAAGATTNCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: TTGTCACTCCCACCAGCGACCTC-GGGAAGATT-CTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211439147|gb|FL388418.1|FL388418
EST:     GCTTGTNACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCRCG                         GGTTAGAAGTTSGCGCTGAGGCAAACTTGGCTCCGGCAATCCAGGTT
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTT
EST: gi|211448431|gb|FL421136.1|FL421136
EST:     CTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGC-CNG                         GGTTAGAAGTTGGCGCTGAAGCAAACTTGGCTGCGGCAATCCAGGTTGCC
genomic: CTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCAC-Ggtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCC
EST: gi|211043017|gb|FL421681.1|FL421681
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211520750|gb|FL372658.1|FL372658
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211053978|gb|FL385080.1|FL385080
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211441973|gb|FL416344.1|FL416344
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|67025094|gb|CO453843.1|CO453843
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211429413|gb|FL420679.1|FL420679
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211395632|gb|FL405425.1|FL405425
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|148954523|gb|EC899958.2|EC899958
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211264091|gb|FL400958.1|FL400958
EST:     CTTGTYCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: CTTGT-CACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211343661|gb|FL392038.1|FL392038
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211126365|gb|FL382914.1|FL382914
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211436970|gb|FL408932.1|FL408932
EST:     GCTTGTYACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211298705|gb|FL383932.1|FL383932
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211133670|gb|FL369480.1|FL369480
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211518320|gb|FL387244.1|FL387244
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211120944|gb|FL412610.1|FL412610
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211151582|gb|FL387834.1|FL387834
EST:     GCTTCTYACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGC
EST: gi|28987468|gb|CB351650.1|CB351650
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211284022|gb|FL376855.1|FL376855
EST:     CTTGTTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: CTTGT-CACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211430981|gb|FL370244.1|FL370244
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211448437|gb|FL421142.1|FL421142
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAG-TTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|71419001|gb|DR804614.1|DR804614
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211415553|gb|FL372637.1|FL372637
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211363462|gb|FL398802.1|FL398802
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCACTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211204240|gb|FL383409.1|FL383409
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211225557|gb|FL386125.1|FL386125
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211124056|gb|FL408223.1|FL408223
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|40334578|gb|CK368648.1|CK368648
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211413299|gb|FL391618.1|FL391618
EST:     GCTTGTYACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211229603|gb|FL380020.1|FL380020
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGG-TTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCC
EST: gi|211533209|gb|FL395808.1|FL395808
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211042757|gb|FL410368.1|FL410368
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
EST: gi|211439859|gb|FL422473.1|FL422473
EST:     GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACG                         GGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC
genomic: GCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 638

CCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTTCGCGTGCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCCAGCTTGCTCTAAAGCATCGCCAGAACAAGAGGCAGCAGCAGAGGATTAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 489

CCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTTCGCGTGCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCCAGCTTGCTCTAAAGCATCGCCAGAACAAGAGGCAGCAGCAGAGGATTAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 585

CCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTTCGCGTGCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCCAGCTTGCTCTAAAGCATCGCCAGAACAAGAGGCAGCAGCAGAGGATTAT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 491

CCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTTCGCGTGCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcac ... tactatatagGGTTAGAAGTTGGCGCTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCCCAGCTTGCTCTAAAGCATCGCCAGAACAAGAGGCAGCAGCAGAGGATTAT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTTCGCGTGCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTATGCACGgtaagctcacatcgatcccaaaacattttctttactattgtgctgagagaatttttgccaattagtttagggattcagtgcaactgcttaatctgtcgcataagttgttagatcatggtacttgtagtttgcttaaccaagtaatgcacaacaatgtactatatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA