1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CATGTGACAGTGGGCGTGGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAGgtgacgaacataggcgctcaagtttggacttgctatgagttcgttgctctgtcactatgcgtggtgatgaactctgtaacgttggaagtaattggtttgcccttcttctttttgtttttgcag
species | Zea mays |
transcript | GRMZM2G165535_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAG TTATTACTAATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACAEST: gi|74245816|gb|DT653730.1|DT653730
genomic: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAGgtgacgaaca ... gtttttgcagTTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
EST: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAG TTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACAEST: gi|71299719|gb|DR785870.1|DR785870
genomic: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAGgtgacgaaca ... gtttttgcagTTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
EST: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAG TTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACAEST: gi|32919710|gb|CF024522.1|CF024522
genomic: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAGgtgacgaaca ... gtttttgcagTTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
EST: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAG TTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACAEST: gi|14646044|gb|BI180233.1|BI180233
genomic: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAGgtgacgaaca ... gtttttgcagTTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
EST: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAG TTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACAEST: gi|71773498|gb|DR971398.1|DR971398
genomic: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAGgtgacgaaca ... gtttttgcagTTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
EST: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAG TTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACAEST: gi|32801826|gb|CD954062.1|CD954062
genomic: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAGgtgacgaaca ... gtttttgcagTTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
EST: GATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAG TTATTACTGAATATGACTACGTCTTCTCCGAAAACGGCCTGGATGCACACA
genomic: GATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAGgtgacgaaca ... gtttttgcagTTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGTGACAGTGGGCGTGGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAGgtgacgaacataggcgctcaagtttggacttgctatgagttcgttgctctgtcactatgcgtggtgatgaactctgtaacgttggaagtaattggtttgcccttcttctttttgtttttgcag
- - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC