Sequence
atgc intronic sequence ATGC exonic sequenceCATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCACTGGGGATAAAGGAGGACGTGTGGTTTTATTTGAAAGGACAGATGTTCGGGATgtaagcaccacatgtatgaacttatcttggttttgattttaatatttttccctaataagttgttataccagcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G165418_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os06g36770.1 (Oryza sativa), 5'ss of exon 2
CATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCACTGGGGATAAAGGAGGACGTGTGGTTTTATTTGAAAGGACAGATGTTCGGGATgtaagcaccacatgtatgaacttatcttggttttgattttaatatttttccctaat--aagttgttataccagcag
|||||| ||||||||||| ||||| ||||||||||| ||||||||||| || || | |||||||||||| |||||||||||||||||||||| ||||||||||||||||| || ||||||| ||||| | |||| | |||||| || || |||| | | |||||
CATCATCTCTGCAATTGAGTTTGATAAATCTGGTGATCATCTTGCCACCGGAGACAGAGGAGGACGTGTTGTTTTATTTGAAAGGACAGATGCTCGGGATgtaagcaccattagt-tgaacttctcttg--ctcaatttcattattttatactcatgaaagtctatctgttagcag
upper sequence: GRMZM2G165418_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA08G20830.1 (Glycine max), 5'ss of exon 2
CATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCACTGGGGATAAAGGAGGACGTGTGGTTTTATTTGAAAGGACAGATGTTCGGGATgtaagcaccacatgt-----atgaacttatcttggttttgattttaatatttttc---cctaataagttg----ttataccagcag----------------------------------
|| || ||||| |||||||||||||| |||||||| |||||||| ||||| ||| || || || || ||| | |||||| |||||||| ||||||| | | | | || || | || | | ||| || || | | | || ||| ||| |
TATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGTGGTGGTCGAGTAGTTCTCTTTGAACGGACAGATACAAAAGATgtaattctgattttttcttcagcaatttcttttataactaaaattactaaacttaaggtttgaaagattccattttacacccttaatttctctaatatctatgtatactgtaacttgcag
upper sequence: GRMZM2G165418_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 2
CATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCACTGGGGATAAAGGAGGACGTGTGGTTTTATTTGAAAGGACAGATGTTCGGGATgtaagcaccacatgt-----atgaacttatcttggttttgattttaatattttt--ccctaataagttg---ttataccagcag---------------------------------
|| || ||||| |||||||||||||| |||||||| |||||||| ||||| ||| || || || || ||| | ||||| |||||||| |||||||| | | | | || || | || | | ||| || || ||| | | ||| ||| |
TATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGTGGTGGTCGAGTAGTTCTCTTTGAGCGGACAGATACAAAAGATgtaagtctaattttttcttcagcaatttcttttataactaaaattactaacttaggttttaaagattctactttacacccttaattttctaatatctatgtatactgtaacttgcag
upper sequence: GRMZM2G165418_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 2
CATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCACTGGGGATAAAGGAGGACGTGTGGTTTTATTTGAAAGGACAGATGTTCGGGATgtaagcaccacatgtatgaacttatcttggttttgattttaatatttttccctaataagtt----gttataccagcag---------------------------------
||| || ||||| |||||||||||||| |||||||| |||||||| ||||| ||| ||| || || |||||| | ||||| || |||||| |||||||| || | | | | || ||||| | || | || |||| ||| ||||| | |
CATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCATCTTGCTACTGGTGATCGAGGTGGTCGAGTGGTTCTCTTTGAGAGAACAGATACAAAAGATgtaag-actattttttgcttatgcaagtgtttttgtgtaaaaaaaaaaaaccaaataggttccttgttatgcacttaatattgtaacatgtatgttttctgaaacatgcag
upper sequence: GRMZM2G165418_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv11s0016g02550.t01 (Vitis vinifera), 5'ss of exon 2
CATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCACTGGGGATAAAGGAGGACGTGTGGTTTTATTTGAAAGGACAGATGTTCGGGATgtaagc------accacatgtatgaacttatcttggttttgattttaatatttttccctaataagttgttataccagcag------------------------------------------------------
|||||| ||||| ||||| ||||||||| |||| ||||||||||| ||||| ||| || ||||| ||||||||||||||||||||||| |||||||| | | |||||| || | | | || || || | |||||| | | || | | |
CATCATTTCTGCTATTGAGTTTGACAAAACTGGAGACCATCTTGCGACTGGTGATCGTGGGGGACGGGTGGTTTTATTTGAAAGGACAGACAAGAGGGATgtatgttgttttatcacatgc-tgtgccttttttttttcattttctcttattttgtttcattttatttctggccttgatttacttctatatcacttcttgttgcaccattttaatgtaattgcataatgtatag
upper sequence: GRMZM2G165418_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 2
CATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCACTGGGGATAAAGGAGGACGTGTGGTTTTATTTGAAAGGACAGATGTTCGGGATgtaagcaccacatgtatgaacttatcttggttttgattttaatatttttccctaataagttgttataccagcag---------------------------------------------
|| || ||||||||||| ||||| |||||||||||||| ||||| ||||| ||| || || || |||||| ||||||| ||||| ||| |||||| | | | | | ||| || | ||| ||| ||| | | ||| |||| |||
TATTATTTCTGCAATTGAGTTTGATAAATCTGGTGACCACCTTGCTACTGGTGATCGTGGGGGCCGGGTGGTTCTATTTGAGAGGACTGATACAAAGGATgtgcgttc----ttttttaacactactggtctttagtttctgtatccaaacttgataggttgccttactgttcttgtttctttcaatattatgatatctttatacactgtaatgtgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31352864|gb|CD437221.1|CD437221EST: ATGTTCGGGAT AATGCCAGCCAGAGAGAACTGGAGAGACCTTATGTTCCAGTTACTAGACAC
genomic: ATGTTCGGGATgtaagcacca ... ataccagcagAATGCCAGCCAGAGAGAACTGGAGAGACAAGATGTTCCAGTTACTAGACAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCACTGGGGATAAAGGAGGACGTGTGGTTTTATTTGAAAGGACAGATGTTCGGGATgtaagcaccacatgtatgaacttatcttggttttgattttaatatttttccctaataagttgttataccagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG