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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGTGCCGTCATTCGGTTCAACCGCAAGTGCTTCCTCAAGTGCACCAGTGGAAATGAACCAAGTGCCTGTTTCTTTGCCAACAAGAACTCTACCATCAGgttagtattggtaggagctgctttcatgaattgatttaaaacatgatgcgaaacgtgacttttgagtctgaactgaactatccattttgttttaattgatagcagtttctgctattgatttagtttaccattgttgatacttaaatagtgcagaaaattttatggttttgtag

Basic information

species Zea mays
transcript GRMZM2G165044_T01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74234292|gb|DT642206.1|DT642206
EST:     AATGAACCAAGTGCCTG-TTCTTTTGCCAACAAGAACTCTACCATCAG                         GTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
genomic: AATGAACCAAGTGCCTGTTTC-TTTGCCAACAAGAACTCTACCATCAGgttagtattg ... ggttttgtagGTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
EST: gi|33467668|gb|CF244717.1|CF244717
EST:     GGAAATGAACCAAGTGCCTGTTTCTTTGCCAACAAGAACTCTACCATCAG                         GTGCACCAGGGATGAACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCT
genomic: GGAAATGAACCAAGTGCCTGTTTCTTTGCCAACAAGAACTCTACCATCAGgttagtattg ... ggttttgtagGTGCACCAGGTATGA-CTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCT
EST: gi|148928371|gb|EE285057.2|EE285057
EST:     GGAAATGACCCAAGTGCCTGTTTCTTTGCCAACAAGGACTCTACCATCAG                         GTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
genomic: GGAAATGAACCAAGTGCCTGTTTCTTTGCCAACAAGAACTCTACCATCAGgttagtattg ... ggttttgtagGTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
EST: gi|149037193|gb|EE155279.2|EE155279
EST:     AAGTGCCTG-TTCTTTGCCAACAAGAACTCTACCATCAG                         GTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
genomic: AAGTGCCTGTTTCTTTGCCAACAAGAACTCTACCATCAGgttagtattg ... ggttttgtagGTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
EST: gi|148943118|gb|EC888176.2|EC888176
EST:     GAAATGAACCAAGTGCCTGTTTCTTTGCCAACAAGAACTCTACCATCAG                         GTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
genomic: GAAATGAACCAAGTGCCTGTTTCTTTGCCAACAAGAACTCTACCATCAGgttagtattg ... ggttttgtagGTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
EST: gi|71766106|gb|DR964043.1|DR964043
EST:     CCTGTTTCTTTGGCAAACAAGAACTCTACCATCAG                         GTGCACCAGGTATGACTAGCAGGGTCGCAACAGGGAGGGCTTACTATCCTG
genomic: CCTGTTTCTTT-GCCAACAAGAACTCTACCATCAGgttagtattg ... ggttttgtagGTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
EST: gi|71420925|gb|DR805237.1|DR805237
EST:     ACAAGAACTCTACCATCAG                         GTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
genomic: ACAAGAACTCTACCATCAGgttagtattg ... ggttttgtagGTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
EST: gi|71774351|gb|DR972229.1|DR972229
EST:     GAAAATGAACCAAGTGCCTGTTTCTTTGCCAACAAGAACTCTACCATCAG                         GTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
genomic: GGAAATGAACCAAGTGCCTGTTTCTTTGCCAACAAGAACTCTACCATCAGgttagtattg ... ggttttgtagGTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
EST: gi|78110999|gb|DV529396.1|DV529396
EST:     GGAAATGAACCAAGTGCCTGTTTCTTTGCCAACAAGAACTCTACCATCAG                         GTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
genomic: GGAAATGAACCAAGTGCCTGTTTCTTTGCCAACAAGAACTCTACCATCAGgttagtattg ... ggttttgtagGTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
EST: gi|211185325|gb|FL304179.1|FL304179
EST:     GGAAATGAACCAAGTGCCTGTTTCTTTGCCAACAAGAACTCTACCATCAG                         GTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
genomic: GGAAATGAACCAAGTGCCTGTTTCTTTGCCAACAAGAACTCTACCATCAGgttagtattg ... ggttttgtagGTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
EST: gi|76921859|gb|DV168737.1|DV168737
EST:     GGAAATGAACCAAGTGCCTGTTTCTTTGCCAACAAGAACTCTACCATCAG                         GTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
genomic: GGAAATGAACCAAGTGCCTGTTTCTTTGCCAACAAGAACTCTACCATCAGgttagtattg ... ggttttgtagGTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
EST: gi|74234293|gb|DT642207.1|DT642207
EST:     GGAAATGAACCAAGTGCCTGTTTCTTTGCCAACAAGAACTCTACCATCAG                         GTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
genomic: GGAAATGAACCAAGTGCCTGTTTCTTTGCCAACAAGAACTCTACCATCAGgttagtattg ... ggttttgtagGTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
EST: gi|89248748|gb|DY620534.1|DY620534
EST:     GAACTCTACCATCAG                         GTGCACCACGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
genomic: GAACTCTACCATCAGgttagtattg ... ggttttgtagGTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
EST: gi|71766107|gb|DR964044.1|DR964044
EST:     GGAAATGAACCAAGTGCCTGTTTCTTTGCCAACAAGAACTCTACCATCAG                         GTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
genomic: GGAAATGAACCAAGTGCCTGTTTCTTTGCCAACAAGAACTCTACCATCAGgttagtattg ... ggttttgtagGTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
EST: gi|86472397|gb|DY238767.1|DY238767
EST:     GAAAAAGAACCAAGTGCCTGTTTCTTTGCCAACAAAAACTCTACCATCAG                         GTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG
genomic: GGAAATGAACCAAGTGCCTGTTTCTTTGCCAACAAGAACTCTACCATCAGgttagtattg ... ggttttgtagGTGCACCAGGTATGACTAGCAGGGTCCCAACAGGGAGGGCTTACTATCCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATGTGCCGTCATTCGGTTCAACCGCAAGTGCTTCCTCAAGTGCACCAGTGGAAATGAACCAAGTGCCTGTTTCTTTGCCAACAAGAACTCTACCATCAGgttagtattggtaggagctgctttcatgaattgatttaaaacatgatgcgaaacgtgacttttgagtctgaactgaactatccattttgttttaattgatagcagtttctgctattgatttagtttaccattgttgatacttaaatagtgcagaaaattttatggttttgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC