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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGTTCCCACATGGTGCCGATGCTTATATTGATGACATAAATGCCCTTGTACCATTAAATGAAGGCAACATCCGAACTGCGCTTGATACTGGATGTGGAgtgagtgaccggaccaatgtttctatgatactgtctgtgattccttctcaaaatttgtggatgatagtatctttgcttgtgtgtgcag

Basic information

species Zea mays
transcript GRMZM2G164916_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164916_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os06g01450.1 (Oryza sativa), 5'ss of exon 2
TATGTTCCCACATGGTGCCGATGCTTATATTGATGACATAAATGCCCTTGTACCATTAAATGAAGGCAACATCCGAACTGCGCTTGATACTGGATGTGGAgtgagtgaccggaccaatgtttctatgatactgtctgtgattcc----ttctcaaaatttgtggatgatagtatctttgcttgtgtgtgcag
 ||||||||||||||||| ||||| ||||| |||||||| || || ||  || ||||||  || ||||||||| ||||||||||||||||||||||||| ||||||||     | |   |||| | |||| | | |||   | |    || | |  |||| || |||    |||||| | | || ||| |||
AATGTTCCCACATGGTGCTGATGCCTATATCGATGACATCAACGCTCTCATATCATTAACGGACGGCAACATCAGAACTGCGCTTGATACTGGATGTGGGgtgagtgatttagcaa---tttccaagatattatgtgtttctgcaaattttttaggatttatgaatg----tatcttggat-gt-tgttcag

upper sequence: GRMZM2G164916_T03 (Zea mays), 5'ss of exon 3
lower sequence: Vv02s0025g03200.t01 (Vitis vinifera), 5'ss of exon 1
TATGTTCCCACATGGTGCCGATGCTTATATTGATGACATAAATGCCCTTGTACCATTAAATGAAGGCAACATCCGAACTGCGCTTGATACTGGATGTGGAgtgagtgaccggaccaa-----tgt-----------ttctatgatactgtc----tgtgattccttctcaaaatttgtggatga----tagtatct-ttgcttgtgtgtgcag--
 |||||||||| ||| || ||||||||||||||||||||||| |  ||  | ||  | | ||  |||| |||| | |||||  ||||||| || ||||| || ||| |  |   |||     |||           ||||||  |||  |     |||  ||  ||     |  |    |  |     || | | | ||| ||| |||||     
CATGTTCCCACGTGGAGCTGATGCTTATATTGATGACATAAACGAGCTCATTCCTCTTACTGGCGGCACCATCAGGACTGCAATTGATACAGGCTGTGGTgtaagtaaaggcttcaactccttgtccatttaggccttctatattaccattgttttgtagtttattgcagtagctaacaggagtctcctactgtttcttgattgggtgtgttaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101384407|gb|EB814248.1|EB814248
EST:     TACCATTAAATGAAGGCAACATCCGAACTGCGCTTGATACTGGATGTGGA                         GTTGCAAGCTGGGGTGCTTATCTTATGAATAGGAACATCATCACCATGTCT
genomic: TACCATTAAATGAAGGCAACATCCGAACTGCGCTTGATACTGGATGTGGAgtgagtgacc ... gtgtgtgcagGTTGCAAGCTGGGGTGCTTATCTTATGAATAGGAACATCATCACCATGTCT