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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGCTTGTAGAAAAGATGCTGAGAAAGCTGATCATTCTATCAGCAGGCATCCTGAATTTCGCTACAAAACTGAGTTTCAAAGCCACGAACCAGAGgtatattctcacaaacattgttaagtggtattatttgtcttctgaattacttgaaatttgataaagtgatgttgttatggaatcag

Basic information

species Zea mays
transcript GRMZM2G164185_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 5'ss of exon 3
CATGCTTGTAGAAAAGATGCTGAGAAAGCTGATCATTCTATCAGCAGGCATCCTGAATTTCGCTACAAAACTGAGTTTCAAAGCCACGAACCAGAGgtatattctcacaaac--attgttaagtggtattatttgtcttctgaattacttgaaatttgataaagtgatgttgttatggaatcag
 |||| ||||||||||| |||||||||| |||| ||||  | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |   | ||  | || | ||||  | ||  |||      |||| || |   ||| |  || |  | |||| |||  || ||
AATGCCTGTAGAAAAGAGGCTGAGAAAGTTGATTATTCCGTTAGCAGGCATCCTGAATTTCGCTACAAAACTGAGTTTCAAAGCCATGAACCAGAGgtatattgtacaagactaactgcttagtga-agtacctgt------aatttct-gttgtttaactaatttgtcttgtcatgcgattag

upper sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA13G42800.1 (Glycine max), 5'ss of exon 3
---CATGCTTGTAGAAAAGATGCTGAGAAAGCTGATCATTCTATCAGCAGGCATCCTGAATTTCGCTACAAAACTGAGTTTCAAAGCCACGAACCAGAGgtatattctcacaaacattgttaagtggtattatttgtcttctgaattacttgaa--atttgataaagtgatgttgttatggaatcag
     ||  |  || |  |||   ||||  |  ||  |||||||  | ||||||||||| || || |||||||| |||||||| || ||||||||||||||| ||  |||        || | || | |  |    || | ||  | |   ||   | |   || | || | |  | || |  ||||
CATGGTGGATCAAGTAGGGATTTGGAGAGGGTGGACTATTCTATTGGTAGGCATCCTGAGTTCCGTTACAAAACAGAGTTTCAGAGTCACGAACCAGAGgta-atcatcatttggtcagtaatgttgcaccaac-atcctatgggtcagaagagtcaatatttataatg-tatgatcattgtttcag

upper sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv04s0008g00840.t01 (Vitis vinifera), 5'ss of exon 3
CATGCTTGTA---GAAAAGATGCTGAGAAAGCTGATCATTCTATCAGCAGGCATCCTGAATTTCGCTACAAAACTGAGTTTCAAAGCCACGAACCAGAGgtatattctcacaaacattgttaagtggtattatttgtcttctgaattacttgaaatttgataaagtgatgttgtta-tggaatcag-----------------------------------
|||| | | |   ||| ||||   ||||  || ||| ||||    |||||||||||||| || | ||| ||||| |||||||| ||||| ||||||||||| |    | |  ||  | |||    |||      ||  | |   ||  |||  |  |||      |    |  ||| |||| || |                                   
CATGGTGGGAATCGAAGAGATTTAGAGATGGCGGATTATTCACCAAGCAGGCATCCTGAGTTCCACTATAAAACCGAGTTTCAGAGCCATGAACCAGAGgtgt-cctttaagaatttcgtttctgggttgctgatgattaccatatc-cttttatcttgtctgtcttccatccttactggactctggaatttaattctgcatttaatatgtttgaattcag

upper sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 3
---CATGCTTGTAGAAAAGATGCTGAGAAAGCTGATCATTCTATCAGCAGGCATCCTGAATTTCGCTACAAAACTGAGTTTCAAAGCCACGAACCAGAGgtatat-tctca-caaacattgttaagtggtatt-atttgtcttctgaattacttgaaatttgataaagtgatgttgttatggaatcag--------------------
      |  |  ||||  |||  |||||     ||  |  | ||    |||||||| |||||||| || |||||||||||||| ||||| ||||| ||||||| | | ||| ||   | |  |   ||   ||  ||||         || ||    |     | || || | |  ||   |   ||                     
CATGGAGGATCAAGAAGGGATCTTGAGAGGATGGACTACCCAATT---AGGCATCCCGAATTTCGTTATAAAACTGAGTTTCAGAGCCATGAACCTGAGgtatttctttcatcagttactcctgcctgaagtttgtttgcaccaccctttgctcactaggctctgaaatgttttaattgatgccacattgcttattctctgtgctcag