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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCCGTGCCGGCCATCTCCCTCCTCGGTGACGTCGCGAGCAGATACACCATATGGACAATTTTGAGGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgagtgagtggtgccccttcgtttgtcctcaccttttctgtgatccgctctgtggtcactcgtggttgtggtttcag

Basic information

species Zea mays
transcript GRMZM2G163683_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G163683_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g48880.1 (Oryza sativa), 5'ss of exon 5
ACGCCGTGCCGGCCATCTCCCTCCTCGGTGACGTCGCGAGCAGATACACCATATGGACAATTTTGAGGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgagtgagtggtgccccttcgtttgtcctc-accttttctgtgatccgctctgtggtcactcgtggttgtggtttcag---------------------------------------------
                                           |||||||| | |||||| || |||||||| ||||||||||| || || ||||| |||||| |||| |||||||  | | |||||| || |  | | ||     ||  |   ||   |   |   |  |||||||                                               
-------------------------------------------ATACACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAGgtgcgtgactggtgcctatgcatttgtcgtctatatgtgcttgtgaccagtacatgacaaa--gcaatcctggtttccttgtaccgtcttctcgatctcaacgtgtgtgtggtcgtgcgtgcag

upper sequence: GRMZM2G163683_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g48880.1 (Oryza sativa), 5'ss of exon 3
-----------------------ACGCCGTGCCGGCCATCTCCCTCCTCGGTGACGTCGCGAGCAGATACACCAT-ATGGACAATTTTGAGGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgagtga-gtggtgccccttcgtttgtcctcaccttttct-gtgatcc------gctctgtggtcactcgtggttgtggttt-cag
                       |||||||||||||||||||||||||||   ||| |     |        |||  |   |    |      || | ||  |  || |  |      |     |   || | |   |  |   |||   |  | ||||| |    |  ||||      | ||||   |  | ||||   ||   || |||
CAACGACGTGTTCGCCATCACCAACGCCGTGCCGGCCATCTCCCTCCTCGCCTACGGCTTCTTCCACCGGGGCATCGTCCCCGGCCTCTGCTTCGGCGCG-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211152087|gb|FK966233.1|FK966233
EST:     ATATGGACAATTTTGAGGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAG                         GAGCTGGAGGAGGTCGGTGGCCTGGACGAGCTGGAAAAGGAGCTCGCGCGA
genomic: ATATGGACAATTTTGAGGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgagtgagt ... gtggtttcagGAGCTGGAGGAGGTCGGTGGCCTGGACGAGCTGGAAAAGGAGCTCGCGCGA
EST: gi|211253690|gb|FL475668.1|FL475668
EST:     ATATGGACAATTTTGAGGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAG                         GAGCTGGAGGAGGTCGGTGGCCTGGACGAGCTGGAAAAGGAGCTCGCGCGA
genomic: ATATGGACAATTTTGAGGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgagtgagt ... gtggtttcagGAGCTGGAGGAGGTCGGTGGCCTGGACGAGCTGGAAAAGGAGCTCGCGCGA
EST: gi|211152088|gb|FK966234.1|FK966234
EST:     ATATGGACAATTTTGAGGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAG                         GAGCTGGAGGAGGTCGGTGGCCTGGACGAGCTGGAAAAGGAGCTCGCGCGA
genomic: ATATGGACAATTTTGAGGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgagtgagt ... gtggtttcagGAGCTGGAGGAGGTCGGTGGCCTGGACGAGCTGGAAAAGGAGCTCGCGCGA