ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

CACATGTGGAAAATGGAGACATGTGCATTGTACTTAATGCACAGGATATCAGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtacccagcaaaaaatttgttggttacattatttatgagatttttgttaactttctcttgttatgtgtttattcccaaatag

Basic information

species	Zea mays
transcript	GRMZM2G163473_T01
intron #	3
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G163473_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g15370.1 (Oryza sativa), 5'ss of exon 3

CACATGTGGAAAATGGAGACATGTGCATTGTACTTAATGCACAGGATATCAGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtacccagcaaaaaatttgttggttacattatttatgagatttttgttaactttctcttgttatgtgtttattcccaaatag
|||||||||||||||||||||||||| |||| ||||||||| | |||||||||||||||||||| |||||||| ||||| || ||||||||||| |||||||| |||     | |   | |  |  |||  ||   || ||   || || || ||  |    | |||||||||| |||  ||||||
CACATGTGGAAAATGGAGACATGTGCGTTGTGCTTAATGCAAAAGATATCAGTGTTACAGGAAGAAAAATGACCGATAAAATCTACTACTGGCACACAGGgtttgtatgtttctagctaatact--gttgaataccttttggttttattatttacaattgtgtcttatgtgttttttc--aaatag

upper sequence: GRMZM2G163473_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g06474.1 (Oryza sativa), 5'ss of exon 3

CACATGTGGAAAATGGAGACATGTGCATTGTACTTAATGCACAGGATATCAGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtac----ccagcaaaaaatttgttg---gttacattatttatgagatttttgttaactttctcttgttatgt--gtttattcccaaatag
||||||||||||| || ||||||||  | |||||||| ||  | ||||||||||| || |||||||||||||| |||||||||||||||||||| |||||||  |||     | |||||| | |   |     |||  ||   | ||  | ||||   ||||  |  | | |  |||  |||| | ||   | ||
CACATGTGGAAAACGGGGACATGTGTGTCGTACTTAACGCGAAAGATATCAGTGTCACGGGAAGGAAAATGACTGATAAGATTTACTACTGGCACACAGGgtctgtatgtttctagcaaatagtacttgaaatgttgaatacctcatttggtttt-actaacaattgcctatcctgttcgtttttccctcgaaag

upper sequence: GRMZM2G163473_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA19G22420.1 (Glycine max), 5'ss of exon 4

CACATGTGGAAAATGGAGACATGTGCATTGTACTTAATGCACAGGATATCAGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtacccagcaaaaaatttgttggttacattatttatgagatttttgttaactttctcttgttatgtgtttattcccaaatag-------------------
|  ||   ||  ||||||||||||||||||| ||||||||| | |||||  |||| || || || ||| | ||||| ||| | ||||||||||||||||||  ||| |   |||       | || | || |  | | |||| || ||  || | | | |   | |   | |  ||   ||||| |                   
CTAATCGTGATGATGGAGACATGTGCATTGTTCTTAATGCAAAAGATATTTGTGTGACTGGGAGAAAACTTACAGACAAGGTCTACTACTGGCATACAGGgcaagtgctttgcatttgtactattagataga--agtgatgaaatattatttgattgttttgggctccttataaat---caaatggtttttttctggttaagatg

upper sequence: GRMZM2G163473_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA19G36450.1 (Glycine max), 5'ss of exon 4

CACATGTGGAAAATGGAGACATGTGCATTGTACTTAATGCACAGGATATCAGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtacccagcaaaaaatttgttggttacattatttatgagatt-tttgttaactttct-cttgttatgt--------gtttattcccaaatag----
|  ||   ||  |||| || ||||||||||| ||||||||| | |||||  |||| || || || ||| | ||||| ||| | ||||||||||||||||||  ||| |   |||       | || |||| |     |   | ||| |||  ||  |||   ||| ||||          ||||  | |    ||     
CTAATCGTGATGATGGGGATATGTGCATTGTTCTTAATGCAAAAGATATTTGTGTGACTGGGAGAAAACTTACAGACAAGGTCTACTACTGGCATACAGGgcaagtgctttgcatttgtactattagttagaagggatgaaatattatttaatagttttgagcttcttataaatcaaatggttttcttctggttaaggtg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|60342857|gb|DN209830.1|DN209830

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|211065317|gb|FL151272.1|FL151272

EST:     NGTGTTWCAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCAT
genomic: -GTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCAT

EST: gi|60343511|gb|DN210484.1|DN210484

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|211068078|gb|FL151284.1|FL151284

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|211498775|gb|FL140826.1|FL140826

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|60347040|gb|DN214013.1|DN214013

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|148938736|gb|EC883069.2|EC883069

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|76015937|gb|DT943107.1|DT943107

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|211284264|gb|FL053254.1|FL053254

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|60397634|gb|DN230450.1|DN230450

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|211068072|gb|FL151278.1|FL151278

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|211068080|gb|FL151286.1|FL151286

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAA-GGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|74241943|gb|DT649857.1|DT649857

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|211068074|gb|FL151280.1|FL151280

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|60354692|gb|DN221665.1|DN221665

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|37361133|gb|CF602422.1|CF602422

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|19822368|gb|BQ048392.1|BQ048392

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|211065321|gb|FL151276.1|FL151276

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|88752119|gb|DY536260.1|DY536260

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGCCCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|148999745|gb|EE036748.2|EE036748

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|5398715|gb|AI812180.1|AI812180

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|211068083|gb|FL151289.1|FL151289

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|9731724|gb|BE510476.1|BE510476

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|60348718|gb|DN215691.1|DN215691

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|87156387|gb|DY401176.1|DY401176

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|211065316|gb|FL151271.1|FL151271

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|149071926|gb|EE160312.2|EE160312

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|148973081|gb|EE024144.2|EE024144

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|78112053|gb|DV530449.1|DV530449

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|19770416|gb|BQ035137.1|BQ035137

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|211068084|gb|FL151290.1|FL151290

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|211284263|gb|FL053253.1|FL053253

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|60349978|gb|DN216951.1|DN216951

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTTGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|149083441|gb|EE172763.2|EE172763

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|211282461|gb|FL053248.1|FL053248

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|76281753|gb|DV021321.1|DV021321

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|32907178|gb|CF011991.1|CF011991

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|60357091|gb|DN224064.1|DN224064

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|211068076|gb|FL151282.1|FL151282

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|211065322|gb|FL151277.1|FL151277

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|211068086|gb|FL151292.1|FL151292

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|211068085|gb|FL151291.1|FL151291

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|60344047|gb|DN211020.1|DN211020

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|22713642|gb|BU197415.1|BU197415

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|60395778|gb|DN228648.1|DN228648

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|26559331|gb|CA831566.1|CA831566

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|211070812|gb|FL151294.1|FL151294

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|60342646|gb|DN209619.1|DN209619

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|211070811|gb|FL151293.1|FL151293

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|149077053|gb|EE165709.2|EE165709

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|148973082|gb|EE024145.2|EE024145

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|211468041|gb|FL459168.1|FL459168

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|74237945|gb|DT645859.1|DT645859

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAGAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|32858018|gb|CD997699.1|CD997699

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|37420605|gb|CF647997.1|CF647997

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|211282457|gb|FL053244.1|FL053244

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|211068073|gb|FL151279.1|FL151279

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|78118041|gb|DV536428.1|DV536428

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|60342547|gb|DN209520.1|DN209520

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|78026238|gb|DV494625.1|DV494625

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|37400998|gb|CF637860.1|CF637860

EST:     AGTGTCACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|211068075|gb|FL151281.1|FL151281

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|149077054|gb|EE165710.2|EE165710

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|211065315|gb|FL151270.1|FL151270

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|56382613|gb|CV985282.1|CV985282

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|76928535|gb|DV171658.1|DV171658

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|211068079|gb|FL151285.1|FL151285

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

EST: gi|78105659|gb|DV524077.1|DV524077

EST:     AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGG                         GTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA
genomic: AGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 370

CACATGTGGAAAATGGAGACATGTGCATTGTACTTAATGCACAGGATATCAGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtaccc ... tcccaaatagGTATGTTGGCCATTTGAAGGAAAGGAGGCTCAAGGACCAGATGGAGAAAGACCCAACTGAAGTGATTCGCAAAGCTGTGCTGCGCATGCTTCCCCGCAAC

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 294

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 197

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 223

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACATGTGGAAAATGGAGACATGTGCATTGTACTTAATGCACAGGATATCAGTGTTACAGGAAGGAAAATGACAGATAAGATTTACTACTGGCATACAGGgttagtacccagcaaaaaatttgttggttacattatttatgagatttttgttaactttctcttgttatgtgtttattcccaaatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA