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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAAGAGTCCAAGAGCGGTTCTTTGTTTGGAGGTTTTCCATCCCTGGAGGAACGAGATAAGTCTTATGACATAAAAGACTCGATGACTGTACATTGTGGgtatgcctatacatttcatatgatttatctcgagatcatgtaatggttgtctacaattatcagtatctcttttgctgtagctaacctactgtttgtttctag

Basic information

species Zea mays
transcript GRMZM2G162884_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G115364_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g19870.1 (Oryza sativa), 5'ss of exon 3
CCAAAGAGTCCAAGAGCGGTTCTTTGTTTGGAGGTTTTCCATCCCTGGAGGAACGAGATAAGTCTTATGACATAAAAGACTCGATGACTGTACATTGTGGgtatgcctatacatttcatatgattta---tctcgagatc-atgtaatggttgtctaca--------attatcagtatctct------tttgc--tgtagctaacct--actgtttgtttctag
| |||||||| ||   |||||||||||||||||||| ||||||  |||| || ||||| ||||||||||||||||||||||| ||||| || |||||||||||||  || | |  |||| || ||||   |||  | ||| || | ||   | ||||||        | ||| | |   | |      ||| |  |||| || | ||  ||||  | ||||   
CAAAAGAGTCAAACCACGGTTCTTTGTTTGGAGGTTATCCATCATTGGAAGAGCGAGACAAGTCTTATGACATAAAAGACTCAATGACGGTTCATTGTGGgtatgtttacatagctcatctgctttagcttctgcacatctatatgataactatctacagaagtacaaatattaatgcattttaatagtttacaatgtaactgaactttactgcatttttcag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148941813|gb|EC886780.2|EC886780
EST:     GAACGAGATAAGTCTTATGACATAAAAGACTCGATGACTGTACATTGTGG                         ATTTGTAAGAGGGA-GGTAACTGGTCTTAATACTGG
genomic: GAACGAGATAAGTCTTATGACATAAAAGACTCGATGACTGTACATTGTGGgtatgcctat ... ttgtttctagATTTGTAAGAGGGAAGGTACCTGGTCTTAATACTGG