1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CGAAGGCGAACGCCAAGGCCCCGAATAAGGCACCCGCGGCGGATGGCTCCAGTTTCAACCAGCTGCTCGGTATCAAGGGTGCTAAGCAAGAGAGCgtgagtcttccctcaatctcttacttcccgtggattgggtatatattgcattgggtagctttggctgggtcgtgtggataatattgggtattaaatacga...
species | Zea mays |
transcript | GRMZM2G162672_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCTCCAGTTTCAACCAGCTGCTCGGTATCAAGGGTGCTAAGCAAGAGAGC GACATATGGAAGATCCGTCTTCAACTTACTAAGCCGGTGACATGGCCTCCGEST: gi|211379068|gb|FL028409.1|FL028409
genomic: GCTCCAGTTTCAACCAGCTGCTCGGTATCAAGGGTGCTAAGCAAGAGAGCgtgagtcttc ... ggcggcacagGACATATGGAAGATCCGTCTTCAACTTACTAAGCCGGTGACATGGCCTCCG
EST: GCTCCAGTTTCAACCAGCTGCTCGGTATCAAGGGTGCTAAGCAAGAGAGC GACATATGGAAGATCCGTCTTCAACTTACTAAGCCGGTGACATGGCCTCCGEST: gi|211302748|gb|FL028408.1|FL028408
genomic: GCTCCAGTTTCAACCAGCTGCTCGGTATCAAGGGTGCTAAGCAAGAGAGCgtgagtcttc ... ggcggcacagGACATATGGAAGATCCGTCTTCAACTTACTAAGCCGGTGACATGGCCTCCG
EST: GCTCCAGTTTCAACCAGCTGCTCGGTATCAAGGGTGCTAAGCAAGAGAGC GACATATGGAAGATCCGTCTTCAACTTACTAAGCCGGTGACATGGCCTCCGEST: gi|61119511|gb|DN560472.1|DN560472
genomic: GCTCCAGTTTCAACCAGCTGCTCGGTATCAAGGGTGCTAAGCAAGAGAGCgtgagtcttc ... ggcggcacagGACATATGGAAGATCCGTCTTCAACTTACTAAGCCGGTGACATGGCCTCCG
EST: GCTCCAGTTTCAACCAGCTGCTCGGTATCAAGGGTGCTAAGCAAGAGAGC GACATATGGAAGATCCGTCTTCAACTTACTAAGCCGGTGACATGGCCTCCGEST: gi|78120047|gb|DV538431.1|DV538431
genomic: GCTCCAGTTTCAACCAGCTGCTCGGTATCAAGGGTGCTAAGCAAGAGAGCgtgagtcttc ... ggcggcacagGACATATGGAAGATCCGTCTTCAACTTACTAAGCCGGTGACATGGCCTCCG
EST: GCTCCAGTTTCAACCAGCTGCTCGGTATCAAGGGTGCTAAGCAAGAGAGC GACATATGGAAGATCCGTCTTCAACTTACTAAGCCGGTGACATGGCCTCCGEST: gi|211379069|gb|FL028410.1|FL028410
genomic: GCTCCAGTTTCAACCAGCTGCTCGGTATCAAGGGTGCTAAGCAAGAGAGCgtgagtcttc ... ggcggcacagGACATATGGAAGATCCGTCTTCAACTTACTAAGCCGGTGACATGGCCTCCG
EST: GCTCCAGTTTCAACCAGCTGCTCGGTATCAAGGGTGCTAAGCAAGAGAGC GACATATGGAAGATCCGTCTTCAACTTACTAAGCCGGTGACATGGCCTCCGEST: gi|149080582|gb|EE169625.2|EE169625
genomic: GCTCCAGTTTCAACCAGCTGCTCGGTATCAAGGGTGCTAAGCAAGAGAGCgtgagtcttc ... ggcggcacagGACATATGGAAGATCCGTCTTCAACTTACTAAGCCGGTGACATGGCCTCCG
EST: GCTCCAGTTTCAACCAGCTGCTCGGTATCAAGGGTGCTAAGCAAGAGAGC GACATATGGAAGATCCGTCTTCAACTTACTAAGCCGGTGACATGGCCTCCG
genomic: GCTCCAGTTTCAACCAGCTGCTCGGTATCAAGGGTGCTAAGCAAGAGAGCgtgagtcttc ... ggcggcacagGACATATGGAAGATCCGTCTTCAACTTACTAAGCCGGTGACATGGCCTCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAAGGCGAACGCCAAGGCCCCGAATAAGGCACCCGCGGCGGATGGCTCCAGTTTCAACCAGCTGCTCGGTATCAAGGGTGCTAAGCAAGAGAGCgtgagtcttccctcaatctcttacttcccgtggattgggtatatattgcattgggtagctttggctgggtcgtgtggataatattgggtattaaatacga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA