1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTGAACCTGAGGAGGTGCAGGCTGTGGATGCCTTCCGCCAGCTTCTTGTACTTGAAGAGCTGCTACCATCGCAGCATGATGACTACCACATGATGCTAAGgtatgtgatatagtaaaggattgtatgattgcattttcatgtgtggtagcattgctgaaagtttgggatcatgaag
species | Zea mays |
transcript | GRMZM2G162461_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTGAAGAGCTGCTACCATCGCAGCATGATGACTACCACATGATGCTAAG ATTTCTCAAGGCAAGAAAGTTTGATATCGAGAAGGCAAAGCAAATGTGGTCEST: gi|78091381|gb|DV519755.1|DV519755
genomic: CTTGAAGAGCTGCTACCATCGCAGCATGATGACTACCACATGATGCTAAGgtatgtgata ... gatcatgaagATTTCTCAAGGCAAGAAAGTTTGATATCGAGAAGGCAAAGCAAATGTGGTC
EST: CTTGAAGAGCTGCTACCATCGCAGCATGATGACTACCACATGATGCTAAG ATTTCTCAAGGCAAGAAAGTTTGATATCGAGAAGGCAAAGCAAATGTGGTCEST: gi|211291581|gb|FL347248.1|FL347248
genomic: CTTGAAGAGCTGCTACCATCGCAGCATGATGACTACCACATGATGCTAAGgtatgtgata ... gatcatgaagATTTCTCAAGGCAAGAAAGTTTGATATCGAGAAGGCAAAGCAAATGTGGTC
EST: CTTGAAGAGCTGCTACCATCGCAGCATGATGACTACCACATGATGCTAAG ATTTCTCAAGGCAAGAAAGTTTGATATCGAGAAGGCAAAGCAAATGTGGTCEST: gi|22546857|gb|BU099168.1|BU099168
genomic: CTTGAAGAGCTGCTACCATCGCAGCATGATGACTACCACATGATGCTAAGgtatgtgata ... gatcatgaagATTTCTCAAGGCAAGAAAGTTTGATATCGAGAAGGCAAAGCAAATGTGGTC
EST: CTTGAAGAGCTGCTACCATCGCAGCATGATGACTACCACATGATGCTAAG ATTTCTCAAGGCAAGAAAGTTTGATATCGAGAAGGCAAAGCAAATGTGGTCEST: gi|6695982|gb|AW289090.1|AW289090
genomic: CTTGAAGAGCTGCTACCATCGCAGCATGATGACTACCACATGATGCTAAGgtatgtgata ... gatcatgaagATTTCTCAAGGCAAGAAAGTTTGATATCGAGAAGGCAAAGCAAATGTGGTC
EST: CTTGAAGAGCTGCTACCATCGCAGCATGATGACTACCACATGATGCTAAG ATTTCTCAAGGCAAGAAAGTTTGATATCGAGAAGGCAAAGCAAATGTGGTCEST: gi|91050816|gb|EB161234.1|EB161234
genomic: CTTGAAGAGCTGCTACCATCGCAGCATGATGACTACCACATGATGCTAAGgtatgtgata ... gatcatgaagATTTCTCAAGGCAAGAAAGTTTGATATCGAGAAGGCAAAGCAAATGTGGTC
EST: CTTGAAGAGCTGCTACCATCGCAGCATGATGACTACCACATGATGCTAAG ATTTCTCAAGGCAAGAAAGTTTGATATCGAGAAGGCAAAGCAAATGTGGTCEST: gi|21390198|gb|BQ528247.1|BQ528247
genomic: CTTGAAGAGCTGCTACCATCGCAGCATGATGACTACCACATGATGCTAAGgtatgtgata ... gatcatgaagATTTCTCAAGGCAAGAAAGTTTGATATCGAGAAGGCAAAGCAAATGTGGTC
EST: CTTGAAGAGCTGCTACCATCGCAGCATGATGACTACCACATGATGCTAAG ATTTCTCAAGGCAAGAAAGTTGGATATCGAGAAGGCAAAGCAAATGTGGTC
genomic: CTTGAAGAGCTGCTACCATCGCAGCATGATGACTACCACATGATGCTAAGgtatgtgata ... gatcatgaagATTTCTCAAGGCAAGAAAGTTTGATATCGAGAAGGCAAAGCAAATGTGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAACCTGAGGAGGTGCAGGCTGTGGATGCCTTCCGCCAGCTTCTTGTACTTGAAGAGCTGCTACCATCGCAGCATGATGACTACCACATGATGCTAAGgtatgtgatatagtaaaggattgtatgattgcattttcatgtgtggtagcattgctgaaagtttgggatcatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT