1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCAAAGCAAGAAAATTGAAGGATCTCATGATAAAAAGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacgtcattgtttctcattgaaattctattattatgtttatcatttcagaagatagctacttacatggcttctctacaaaagatccttcctttt...
species | Zea mays |
transcript | GRMZM2G161728_T04 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|211285005|gb|FL330934.1|FL330934
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|148970443|gb|EE021294.2|EE021294
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|148982152|gb|EE028182.2|EE028182
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|211110591|gb|FL338760.1|FL338760
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|211369326|gb|FL186711.1|FL186711
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|211029006|gb|FL358137.1|FL358137
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGA ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAAEST: gi|211369327|gb|FL186712.1|FL186712
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|211531455|gb|FL327595.1|FL327595
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|211381172|gb|FL350978.1|FL350978
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|211255468|gb|FL340105.1|FL340105
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|78079893|gb|DV508305.1|DV508305
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|211230929|gb|FL338421.1|FL338421
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|211342585|gb|FL343867.1|FL343867
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAAYGTGGAGATGTTCATAGEST: gi|211005122|gb|FL358937.1|FL358937
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|94474289|gb|EB703247.1|EB703247
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAAATGTTCATAGEST: gi|211437933|gb|FL338199.1|FL338199
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|211531838|gb|FL338634.1|FL338634
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|211467079|gb|FL315616.1|FL315616
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|211268265|gb|FL364919.1|FL364919
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|13558576|gb|BG549932.1|BG549932
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|211409281|gb|FL329226.1|FL329226
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGAEST: gi|211430763|gb|FL360603.1|FL360603
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGA
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAAATGTGGAGATGTTCATAEST: gi|211369324|gb|FL186709.1|FL186709
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAA-TGTGGAGATGTTCATA
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|91050811|gb|EB161229.1|EB161229
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|149008427|gb|EE040587.2|EE040587
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|71327521|gb|DR800373.1|DR800373
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|211006794|gb|FL317953.1|FL317953
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|211354852|gb|FL354351.1|FL354351
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGT-CACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|211291944|gb|FL367895.1|FL367895
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|211118991|gb|FL350362.1|FL350362
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|211279546|gb|FL328174.1|FL328174
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|76287384|gb|DV026952.1|DV026952
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|211375633|gb|FL110751.1|FL110751
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAWATGTGGAGATGTTCATAGEST: gi|211284991|gb|FL330460.1|FL330460
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|211500673|gb|FL332349.1|FL332349
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|211510664|gb|FL361518.1|FL361518
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|211094177|gb|FL353110.1|FL353110
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAGEST: gi|211286672|gb|FL320843.1|FL320843
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
EST: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGC ATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
genomic: AGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacg ... tgcatttcagATCTGCTAATATTGGAGTGTTTCTTTGCTTAAAATGTGGAGATGTTCATAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAAGCAAGAAAATTGAAGGATCTCATGATAAAAAGTGACAATAGGATATGTGCTGACTGTGGTGCACCTGATCCCAAATGGGCgtaagtgacgtcattgtttctcattgaaattctattattatgtttatcatttcagaagatagctacttacatggcttctctacaaaagatccttcctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaaaga