Sequence
atgc intronic sequence ATGC exonic sequenceCGTTTTGCTGCAGTCATCATGAGAATAAGAGAACCCAAAACCACAGCACTGATATTTGCATCGGGTAAAATGgtatgtcatcaatgtcttctcttatactgtcaattttcaaggatttgcttacttttggtggcagaatttcccttctattaaatttattgacatcaaatta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G161418_T05 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os12g39070.1 (Oryza sativa), 5'ss of exon 3
CGTTTTGCTGCAGTCATCATGAGAATAAGAGAACCCAAAACCACAGCACTGATATTTGCATCGGGTAAAATGgtatgtcatcaatgtcttct-----cttatactgtcaattttcaa--ggatttgcttacttttggtggcagaatttcccttctat-taaatttattgacatcaaatta
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CGTTTTGCTGCAGTTATCATGAGAATAAGAGAACCGAAAACTACAGCTCTGATATTTGCATCGGGTAAAATGgtatggt-tcaacctctttgtatagctaagactgcaaatattctgtttgttcatcttcttattgacttgtgaattgctttatcacctgtctttgttgctct-------
upper sequence: GRMZM2G161418_T05 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g45410.1 (Oryza sativa), 5'ss of exon 4
CGTTTTGCTGCAGTCATCATGAGAATAAGAGAACCCAAAACCACAGCACTGATATTTGCATCGGGTAAAATGgtatgtcatcaatgtcttctcttat-actgtcaattttcaag--gatttgcttactt-ttggtggcagaatttcccttctattaaatttattgacatcaaatta
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CGTTTTGCTGCGGTTATCATGAGAATAAGAGAACCAAAAACTACAGCTCTGATATTTGCATCGGGTAAAATGgtatggt-tcaacttcttgtaccgtgactgcaaatgttctgttttgttcatctgcttattgacttgtgaattgttttgttatctgtccaatggccagctgt---
upper sequence: GRMZM2G161418_T05 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA02G06370.1 (Glycine max), 5'ss of exon 1
----------------------------CGTTTTGCTGCAGTCATCATGAGAATAAGAGAACCCAAAACCACAGCACTGATATTTGCATCGGGTAAAATGgtatgtcatcaatgtcttctcttatactgtcaattttcaaggatttgct-tacttttggtggcagaatttcccttctattaaatttattgacatcaaatta--
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TGGTTGGTGGTATACTGTTTGTTTGCAGCGTTTTGCTGCTGTCATTATGAGGATAAGAGATCCCAAAACAACAGCACTTATTTTTGCTTCTGGCAAGATGgtatgc--tcctttgctgcactgctatggctatcttttagatgatagtagtgcattttgttatttttaatgctgtcc-tcaaatttgtagttgtgtgattctc
upper sequence: GRMZM2G161418_T05 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA16G25450.3 (Glycine max), 5'ss of exon 4
CGTTTTGCTGCAGTCATCATGAGAATAAGAGAACCCAAAACCACAGCACTGATATTTGCATCGGGTAAAATGgtatgtcatcaatgtcttctcttatactgtcaattttcaaggatttgcttacttttggtggcagaatttcccttctattaaatttattg-acatcaaatta-
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CGTTTTGCTGCTGTCATTATGAGGATAAGAGATCCCAAAACAACTGCACTTATTTTTGCTTCTGGCAAGATGgtatgctcctttgctgcactgttatgcc-tatcttttagatgatagtagtgcatttggatatttttaatgctgtcc-tcaaattaattccatgttaatttgt
upper sequence: GRMZM2G161418_T05 (Zea mays), 5'ss of exon 4
lower sequence: EFJ17606 (Selaginella moellendorffii), 5'ss of exon 3
CGTTTTGCTGCAGTCATCATGAGAATAAGAGAACCCAAAACCACAGCACTGATATTTGCATCGGGTAAAATGgtatg----tcatcaatgtcttctcttat--actgtcaattttcaaggatttgcttac-ttttggtggcagaatttcccttctattaaatttattgacatcaaatta
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CGTTTTGCTGCTGTGATCATGCGTATAAGAGAACCCAAAACCACGGCTCTCATCTTTGCGTCCGGAAAGATGgtgagatttttatccgtgacctcgacgactaactgctaattcagtaagatttttttttattttttttttcttgtttggtctctacttag------------------
upper sequence: GRMZM2G161418_T05 (Zea mays), 5'ss of exon 4
lower sequence: EFJ29072 (Selaginella moellendorffii), 5'ss of exon 3
CGTTTTGCTGCAGTCATCATGAGAATAAGAGAACCCAAAACCACAGCACTGATATTTGCATCGGGTAAAATGgtatgtcatcaatgtcttctcttatactgtcaattttcaaggatttgcttacttttggtggcagaatttcccttctattaaatttattgacatcaaatta
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CGTTTTGCTGCTGTGATCATGCGTATAAGAGAACCCAAAACCACGGCTCTCATCTTTGCGTCCGGAAAGATGgtgag--------atttttattcgtgacctcgacgactaag----tgctaa--ttcagta--agaatttttttttttcttgtttgttctctacctag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67021248|gb|CO449997.1|CO449997EST: GA-TAAGAGAACCCANA-CCACAGCACTGATATTTGCATCGGGTAAAATG GTATGTACTGGAGCGAAAAGTGA-CAGCA-TCCAAGCTTGCA
genomic: GAATAAGAGAACCCAAAACCACAGCACTGATATTTGCATCGGGTAAAATGgtatgtcatc ... aattttctagGTATGTACTGGAGCGAAGAGTGAACAGCAATCCAAGCTTGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGTTTTGCTGCAGTCATCATGAGAATAAGAGAACCCAAAACCACAGCACTGATATTTGCATCGGGTAAAATGgtatgtcatcaatgtcttctcttatactgtcaattttcaaggatttgcttacttttggtggcagaatttcccttctattaaatttattgacatcaaatta
- - - - - - - - - - - - - AAGAGA