Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGCCTGTTCTTGATCTCGTGGCTGGCTCTATAGCTGGAGGGACAGCTGTCATATGCACATACCCTCTTGATCTAGTCCGCACAAAGTTGGCTTATCAGgttggttcgaatccttcttgcatccttcgctaaactggaaaaccacacttctgttggaattcaagttacatttgctgtattgtgtatcaacataattttcgaataaggatttggttagcataagcacatatgtccttttcttttgattctcaatatctttctaattagttattgtctgcgcag

Basic information

species Zea mays
transcript GRMZM2G161299_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G161299_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g13300.2 (Oryza sativa), 5'ss of exon 3
AGGGCCTGTTCTTGATCTCGTGGCTGGCTCTATAGCTGGAGGGACAGCTGTCATATGCACATACCCTCTTGATCTAGTCCGCACAAAGTTGGCTTATCAGgttggttcgaatccttcttgcatccttcgctaaactggaaaaccacacttct----gttggaattcaagttacatttgctgtattgtgtatcaacataattttcgaataaggatttggttagcataagcacatatgtccttttcttttgattctcaatatctttctaattagttattgtctgcgcag
||| ||| |||||||||| |||||||| || |||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||   |   |  |||||| |||||  |  |  |||||  |||||||||    |   || |||||| | |   || |||||     || ||||   | |                                                                                     
AGGCCCTATTCTTGATCTAGTGGCTGGATCAATAGCTGGTGGAACAGCTGTCATATGCACATACCCTCTTGATCTAGTTCGCACAAAGTTGGCTTATCAGgttggtctta---caccttgcacccttcattccagaggaaa-tcacacttcttcaagggagatttcaagctgctcctgatgtatcacacattaacaagctctct-----------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67010867|gb|CO439616.1|CO439616
EST:     TCATATGCACATACCCTCTTGATCTAGTCCGCACAAAGTTGGCTTATCAG                         GTGAAAGGTGCAGTCATTGTGGGTTTCAGAGAATCTAAGCCCTCTGAACAG
genomic: TCATATGCACATACCCTCTTGATCTAGTCCGCACAAAGTTGGCTTATCAGgttggttcga ... gtctgcgcagGTGAAAGGTGCAGTCAGTGTGGGTTTCAGAGAATCTAAGCCCTCTGAACAG
EST: gi|71442969|gb|DR824019.1|DR824019
EST:     TCATATGCACATACCCTCTTGATCTAGTCCGCACAAAGTTGGCTTATCAG                         GTGAAAGGTGCAGTCAGTGTGGGTTTCAGAGAATCTAAGCCCTCTGAACAG
genomic: TCATATGCACATACCCTCTTGATCTAGTCCGCACAAAGTTGGCTTATCAGgttggttcga ... gtctgcgcagGTGAAAGGTGCAGTCAGTGTGGGTTTCAGAGAATCTAAGCCCTCTGAACAG
EST: gi|76294060|gb|DV033628.1|DV033628
EST:     TCATATGCACATACCCTCTTGATCTAGTCCGCACAAAGTTGGCTTATCAG                         GTGAAAGGTGCAGTCAGTGTGGGTTTCAGAGAATCTAAGCCCTCTGAACAG
genomic: TCATATGCACATACCCTCTTGATCTAGTCCGCACAAAGTTGGCTTATCAGgttggttcga ... gtctgcgcagGTGAAAGGTGCAGTCAGTGTGGGTTTCAGAGAATCTAAGCCCTCTGAACAG