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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAGgtgaaatagcttggcatgtcttctgtccctattatctagtgttctcaatattttctttggattgtatctaaacaccgaatcatcagcgtgatatattctt...

Basic information

species Zea mays
transcript GRMZM2G160842_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G160842_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g32460.1 (Oryza sativa), 5'ss of exon 3
GTCGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAGgtg-aaatagcttggcatgtcttctgtccctattatctagtgttctc-aatattttctttggattgtatctaaacaccgaatcatcagcgtgatatattctt-----
|| ||||||||||||| ||||| |||||||||||  | ||||| ||||| ||||||||  | |||  ||||| ||| || ||||| | | ||||  ||||||| |||| |||| ||  ||| |  ||     | |||| ||  |  |||| | |  ||     
GTTGCTTGGGCATTGTTGATGGAGATGATGTTGAGCTTAATAACCTTCACCGACAGgtacagataatttggcgtgtattttgtccatgt-atcttctgttctctaatactttcatt--attttccctt----ctgaattatttgaatgatgtttgattactga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211107289|gb|FL028196.1|FL028196
EST:     TGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAG                         ATAATTCATAAAGAAGCATATGTTGGACAATCTAAAGTGAAGTC
genomic: TGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAGgtgaaatagc ... attgtctcagATAATTCATAAAGAAGCATATGTTGGACAATCTAAAGTGAAGTC
EST: gi|149009441|gb|EE041457.2|EE041457
EST:     TGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCCTCGACCG                         ATAATTCATAAAGAAGCATATGTTGGACAATCTAAAGTGAAGTCAGCCGCT
genomic: TGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAGgtgaaatagc ... attgtctcagATAATTCATAAAGAAGCATATGTTGGACAATCTAAAGTGAAGTCAGCAGCT
EST: gi|78106504|gb|DV524922.1|DV524922
EST:     TGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAG                         ATAATTCATAAAGAAGCATATGTTGGACAATCTAAAGTGAAGTCAGCAGCT
genomic: TGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAGgtgaaatagc ... attgtctcagATAATTCATAAAGAAGCATATGTTGGACAATCTAAAGTGAAGTCAGCAGCT