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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTTGATGATTGCAGCAATTCCAAACGTCATTGGTTGGCTTGCGATCTCCTTTGCAAAAgtatggtactatgtgtttctttttttatttcaacatattgcttgacaggtgtcaacaataggcttgatgactgtttgacatctgttttgcag

Basic information

species Zea mays
transcript GRMZM2G160460_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G160460_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g49270.1 (Oryza sativa), 5'ss of exon 3
TCGTTGATGATTGCAGCAATTCCAAACGTCATTGGTTGGCTTGCGATCTCCTTTGCAAAAgtatggtactatgtgtttctt--tttttatttcaacatattgcttgacaggtgtcaacaataggcttgatgactgtttgacatctgttttgcag
|| ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| | ||  || |||    | ||  ||||| ||  ||| |||     |   |    || ||| |||| ||          || |||  ||
TCATTGATGATTGCTGCAATTCCAAACATCATTGGTTGGCTTGCCATCTCCTTTGCAAAAgtatggcattacatggttcagaatcttactttcaccaccttg-ttgctttatacaatt--taagctcgatgcct---------ttgctttatag

upper sequence: GRMZM2G160460_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g49260.1 (Oryza sativa), 5'ss of exon 3
TCGTTGATGATTGCAGCAATTCCAAACGTCATTGGTTGGCTTGCGATCTCCTTTGCAAAAgtatggtactatgtgtttctttt-tttatttcaacatattgcttgacaggtgtcaacaataggcttgatgactgtttgacatctgttttgcag
|||||||| ||||| ||  |||| ||| |||||||||||||||| |||||||||||||||||| | |   |  | |||||     ||||||       ||   ||   | | |     |   | || ||   ||   ||  | |||||| |||
TCGTTGATAATTGCGGCGGTTCCTAACATCATTGGTTGGCTTGCCATCTCCTTTGCAAAAgtacg-tgtcacatatttctcaagcttattt-------ttctctgtttgctctttttcactagtttcattcttgcc-gatctttgtttttcag

upper sequence: GRMZM2G160460_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA14G08070.1 (Glycine max), 5'ss of exon 4
TCGTTGATGATTGCAGCAATTCCAAACGTCATTGGTTGGCTTGCGATCTCCTTTGCAAAAgtatggtactatgtgtttctttttttatttcaacatattgcttgac---aggtgtcaacaataggc---ttgatgactgtttgac--atctgttttgcag------------------------------------------------------------------------------
|| |||||||||||| | ||||||||  | ||||||||||| || ||||| |||||||||||| | |   |||  |||  | ||||||||      |||  || ||   |  |  ||  ||| ||    |  |||    | ||    || | || |  |                                                                               
TCTTTGATGATTGCATCCATTCCAAATATTATTGGTTGGCTGGCTATCTCATTTGCAAAAgtaagtttgaatgattttagtattttattttcctccattcatttacccaaaattacattaattggtatttcaatgtggttctggataatttattgtttatccaaacatgcaattatttagtaaatatatttggtcgtgattctgagcttgtcttattgacatgttcttcaattttcag