1 5' 3' | 2 5' 3' | 3 5' 3' |
TACTGAACAATTTGAACCAGTACACCTTCTTAAAGCATATCTAAGGGATGTTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgtcattttagtttgaattttgtaatgtttttttgtagaattttaaaaactgcccctgtacataacaaaatgattactcttcaaaacctgtga...
species | Zea mays |
transcript | GRMZM2G160316_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAG AATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGCEST: gi|211250452|gb|FK978630.1|FK978630
genomic: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGC
EST: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAG AATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGCEST: gi|87153317|gb|DY398106.1|DY398106
genomic: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGC
EST: TTAAGAAAATGTCACACGCCAGGAATGTCAAAATTTCTCCTGGAGCACAG AATGAGATGAATGAACGTGAGTTEST: gi|29543979|gb|CB604359.1|CB604359
genomic: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTT
EST: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAG AATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGCEST: gi|31405937|gb|CD484669.1|CD484669
genomic: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGC
EST: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAG AATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGCEST: gi|6020587|gb|AW065620.1|AW065620
genomic: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGC
EST: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAG AATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGCEST: gi|31406338|gb|CD485070.1|CD485070
genomic: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGC
EST: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAG AATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGCEST: gi|91056387|gb|EB166805.1|EB166805
genomic: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGC
EST: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAG AATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGCEST: gi|60354203|gb|DN221176.1|DN221176
genomic: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGC
EST: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAG AATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGCEST: gi|8930234|gb|BE224998.1|BE224998
genomic: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGC
EST: TTAAGAAAATGTCACACGCCAGGATTGTCAAAACTTCTCCTGGAGCACAG AATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGCEST: gi|61118818|gb|DN559779.1|DN559779
genomic: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGC
EST: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAG AATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGCEST: gi|76282460|gb|DV022028.1|DV022028
genomic: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGC
EST: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAG AATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGCEST: gi|211250451|gb|FK978629.1|FK978629
genomic: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGC
EST: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAG AATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGCEST: gi|166450367|gb|EG228309.1|EG228309
genomic: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGC
EST: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAG AATGAGATGAATGAACGTGAGTTAEST: gi|29544335|gb|CB604715.1|CB604715
genomic: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTTA
EST: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAG AATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGCEST: gi|9733694|gb|BE512446.1|BE512446
genomic: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGC
EST: TAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAG AATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGCEST: gi|60400787|gb|DN233594.1|DN233594
genomic: TAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGC
EST: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAG AATGAGATGAATGAACGEST: gi|60354451|gb|DN221424.1|DN221424
genomic: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACG
EST: CAAAACTTCTCCTGGAGCACAG AATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGCEST: gi|60350356|gb|DN217329.1|DN217329
genomic: CAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGC
EST: ACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAG AATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGCEST: gi|17932317|gb|BM269277.1|BM269277
genomic: ACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGC
EST: AGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAG AATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGCEST: gi|60343259|gb|DN210232.1|DN210232
genomic: AGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGC
EST: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAG AATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGCEST: gi|20300669|gb|BQ163612.1|BQ163612
genomic: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGC
EST: TTAAGAAAATGTCACACGCCAGGAATGTCAAAATTTCTCCTGGAGC-CAG AATGAGATGAATGAACGTGAGTTEST: gi|22818834|gb|BU498924.1|BU498924
genomic: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTT
EST: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAG AATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAEST: gi|19436600|gb|BM953010.1|BM953010
genomic: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAA
EST: TTAAGAAAATGTCACACGCCAGGAATGTCAAAATTTCTCCTGGAGC-CAG AATGAGATGAATGAACGTGAGTTEST: gi|67018089|gb|CO446838.1|CO446838
genomic: T-AAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTT
EST: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAG AATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGCEST: gi|8577162|gb|BE129799.1|BE129799
genomic: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGC
EST: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAG AATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGCEST: gi|211256715|gb|FL283526.1|FL283526
genomic: TTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGC
EST: GTCAAAACTTCTCCTGGAGCACAG AATGCCTTTATTGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGC
genomic: GTCAAAACTTCTCCTGGAGCACAGgtacatttgt ... ttgttttcagAATGAGATGAATGAACGTGAGTTATCTGCGCTGAAATCTGTCATTAAGTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTGAACAATTTGAACCAGTACACCTTCTTAAAGCATATCTAAGGGATGTTAAGAAAATGTCACACGCCAGGAATGTCAAAACTTCTCCTGGAGCACAGgtacatttgtcattttagtttgaattttgtaatgtttttttgtagaattttaaaaactgcccctgtacataacaaaatgattactcttcaaaacctgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaat