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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAGGGAAAACTAGTTGATCCGGTCAGCGGTGCTGATGTGGTCACTACTTACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctgcattctagtgtgccatcatctaggatttgatcaggcaaatgttcaggcttcagcttcttatatgctgccttgttgattgttgtccctgcag

Basic information

species Zea mays
transcript GRMZM2G159285_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G159285_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g53150.1 (Oryza sativa), 5'ss of exon 3
ATGAGGGAAAACTAGTTGATCCGGTCAGCGGTGCTGATGTGGTCACTACTTACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgtt----ctgcattctagtgtgccatcatctaggatt----------------tgatcaggcaaatgttcag--gcttcagcttcttatatgctgcctt-gttgattgttgtccctgcag
     |||| | || |  ||  ||| |  ||  ||||||  || || ||||| |||||||||||||| ||||||||||| ||||| || ||||||||| ||||||||    || |||||| |||  || | | ||    |                 |||| ||      ||| ||      ||  |||   | |   || || | |||||| |  | ||||||
-----GGAACAATA-TGAATGAGGTGAATGGCTCTGATGCTGTTACAACTTATGAAGACAAGGATGGTGACTGGATGCTTGTTGGAGATGTCCCGTGGCAgtatgttactacttcattcttgtgcccccttaactgttttccttattttccacctcatgattagaatgcggtttagcgataccacgttcaagtttctcgcattagctgattggttactctgcag

upper sequence: GRMZM2G159285_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA20G35270.1 (Glycine max), 5'ss of exon 4
ATGAGGGAAAACTAGTTGATCCGGTCAGCGGTGCTGATGTGGTCACTACTTACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctgcattctagtgtgccatcatctaggatttgatcaggcaaatgttcaggcttcagcttcttatatgc---tgccttgttgatt--gttgtccctgcag
||||| | ||  |  | ||||   | | | |  ||||    ||  | |  || ||||| |||||||| |||||||||||||| || || ||||| |||||||| ||||| ||| | |      | ||  |    |||  ||     || |    |       | ||  || || |   |   ||    |||  ||  ||       
ATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAAGCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAgtaagttcttcatccaacaacaacctctgcagccattatatacaataatttcctacatacttgatttatacatccatatattttacaaattcagtaatct------

upper sequence: GRMZM2G159285_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA03G40760.1 (Glycine max), 5'ss of exon 2
ATGAGGGAAAACTAGTTGATCCGGTCAGCGGTGCTGATGTGGTCACTACTTACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctgcattctagtgtgccatcatctaggatttgatcaggcaaatgttcaggcttcagcttc-ttatatgctgccttgttgattgt-tgtccctgcag
| ||| | ||| |  ||||||   ||| |||  |||||   ||  | || || |||||||| ||||  ||||||||||||||||| ||||| ||||||||||| || ||| |   |  | | |  | | |    |    |||    || | ||  | |     ||   ||| |   | |    |||  | | |       |||
ACGAGAGCAAATTGATTGATCTTCTCAACGGCTCTGATTACGTACCAACCTATGAAGACAAAGATGCTGACTGGATGCTCGTTGGTGACGTACCGTGGGAgtaagt-ctggaccattattt-ctctaagcacacaccacatcct-taattattaggaccatttctcgattaaacattactaatttggatatataatttcacag

upper sequence: GRMZM2G159285_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA10G32340.1 (Glycine max), 5'ss of exon 3
ATGAGGGAAAACTAGTTGATCCGGTCAGCGGTGCTGATGTGGTCACTACTTACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctgcattctagtgtgccatcatctaggatttgatcaggcaaatgttcaggcttcagcttcttatatgctgccttgttgattgttgt-ccctgcag
||||| | ||  |  | ||||   | | | |  ||||    ||  | || || ||||| |||||||| |||||||||||||| || || ||||| |||||||| ||||| ||| | |      | ||  |    |||  ||     || |  | |    |   |||  ||||| |     | |  ||   | |    | |  
ATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAgtaagttcttcatccaacaacaacctctgcagctattatatacaataatttcttacatatatactttatatatacataactatgtatccatatattttac--

upper sequence: GRMZM2G159285_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT3G23050.1 (Arabidopsis thaliana), 5'ss of exon 3
ATGAGGGAAAACTAGTTGATCCGGTCAGCGGTGCTGATGTGGTCACTACTTACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctgcattctagtgtgccatcatctaggatttgatcaggcaaatgttcaggcttcagcttcttatatgctgccttgttgattgttgtccctgcag--
| ||| | || ||| |  ||| | | |   |  ||||    ||  | |  ||||| ||||| ||||| |||||||||||||||||||| ||||| |||||||  ||     |||  |  ||  ||| ||      ||| || |   | |  || |  | | | |  | | |        | || ||       ||    |   
ACGAGAGCAAGCTAATGAATCTGCTGAATAGCTCTGAGTATGTGCCAAGCTACGAGGACAAAGATGGTGACTGGATGCTCGTTGGCGATGTCCCATGGGAgtgagtc--aaatttaatcgtttcat-atacttttttttataacttataacttgactcgttaaccacatttcccgaaattggtagagacaaagccaaagatat

upper sequence: GRMZM2G159285_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT3G04730.1 (Arabidopsis thaliana), 5'ss of exon 3
ATGAGGGAAAACTAGTTGATCCGGTCAGCGGTGCTGATGTGGTCACTACTTACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgt-tctgcattctagtgtgccatcatctaggatttgatcaggcaaatgttcaggcttcagcttc--ttatatgctgccttgttgattgttgtccctgcag
||||| | ||| |  | ||||   | | |||  | |||   ||  | || || ||||| || ||||||||||||||||| || || ||||| ||||||||||  || | |  ||     |        || |    | | || |   | | ||  |  |   |  ||   ||| ||| ||  | |   ||| | |         
ATGAGAGTAAATTGATCGATCTTCTAAACGGATCAGATTATGTTCCAACATATGAAGATAAAGATGGCGACTGGATGCTTGTAGGAGACGTACCGTGGGAgtgagtatttttatatctttaaatttatatatgaattattattataaatacgtctatacaaaatatttatttacatgttgtttggactattttag---------

upper sequence: GRMZM2G159285_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv07s0141g00290.t01 (Vitis vinifera), 5'ss of exon 3
ATGAGGGAAAACTAGTTGATCCGGTCAGCGGTGCTGATGTGGTCACTACTTACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctgcattctagtgtgccatcatctaggat-ttgatcaggcaaatgttcag----gcttcagcttcttatatgctgccttgttgattgttgtccctgcag
||||| | ||  |  | ||||   | |  |||  ||||   ||  | || ||||||||||| ||||| || |||||||||||||| || ||||| |||||||| ||||| |   | | || |   |    ||        |  |   | || ||  |         || || | | ||  |  ||     ||  || ||  |    
ATGAGAGCAAGTTGATGGATCTTTTGAATGGTTTTGATCATGTTCCAACATACGAAGACAAAGATGGGGATTGGATGCTCGTTGGAGATGTCCCATGGGAgtaagttcttccaacca-tgagttttggcttaaatcaccaaaaatatatatattaggcagaaaaatagtttttgaaataat-tctaaaaaatgattatcaat----

upper sequence: GRMZM2G159285_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv14s0081g00010.t01 (Vitis vinifera), 5'ss of exon 3
ATGAGGGAAAACTAGTTGATCCGGTCAGCGGTGCTGATGTGGTCACTACTTACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgtt-ctgcattctagtgtgccatcatctaggatttgatc---aggcaaatgt---tcaggcttcagcttcttata--tgctgccttgttgattgttgtccctgcag
||||| | ||| |  | ||||   | | |||| | |||   ||  ||||||| |||||||| ||||| ||||||||||| ||||| ||||| || |||||||| ||| |  ||||  |   |    ||   |   | ||| |    ||||  |  |   | |  |   || || |  ||  |  | | |  |||    |||   | |   
ATGAGAGCAAATTGATCGATCTTTTGAACGGTTCCGATTACGTGCCTACTTATGAAGACAAAGATGGAGACTGGATGCTTGTTGGAGACGTGCCATGGGAgtaagttacaacatttgacaatattttccaatttaaattgtttcaaaggcttacatcaattaatccatagattttactaattaatccttctttggaatttgaatcag---

upper sequence: GRMZM2G159285_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv05s0020g04690.t01 (Vitis vinifera), 5'ss of exon 3
ATGAGGGAAAACTAGTTGATCCGGTCAGCGGTGCTGATGTGGTCACTACTTACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctgcattctagtgtg--ccatcatctaggatttgatcaggcaaatgttcaggcttcagcttcttatatgctgccttgttgattgttgtccctgcag-
||||| | ||  |  | ||||   | | | |  ||||    ||  | || || ||||| |||||||| |||||||||||||| || || || || ||||||||||||||  |||    |     || | |      | |  || |  | | |   |||     |   |     | |    |    ||  | |  | | ||  | 
ATGAGAGCAAGTTGATGGATCTTTTGAACAGCTCTGAATATGTTCCAACCTATGAAGATAAGGATGGAGACTGGATGCTCGTGGGTGATGTTCCATGGGAgtatgttcttgatttctctagaaaccctaacacgaaaatcaataaaactagt---cagaaactaaaataagcca-gtgagccaactgggtctaatacatggggt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37384582|gb|CF629379.1|CF629379
EST:     TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGA                         GATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGTTCTGAAGC
genomic: TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctg ... gtccctgcagGATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
EST: gi|71757626|gb|DR955563.1|DR955563
EST:     TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGA                         GATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
genomic: TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctg ... gtccctgcagGATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
EST: gi|37381992|gb|CF627908.1|CF627908
EST:     TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGA                         GATTTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGTTCTGAAGC
genomic: TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctg ... gtccctgcagGATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
EST: gi|20208504|gb|BQ134593.1|BQ134593
EST:     TACGAAGATAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGA                         GATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
genomic: TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctg ... gtccctgcagGATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
EST: gi|28982929|gb|BQ538419.2|BQ538419
EST:     TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGA                         GATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
genomic: TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctg ... gtccctgcagGATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
EST: gi|5871753|gb|AW018224.1|AW018224
EST:     TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGA                         GATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGTTCTGAAGC
genomic: TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctg ... gtccctgcagGATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
EST: gi|37381948|gb|CF627882.1|CF627882
EST:     TACGAAGACAAGGATGGCGACTGGATGCTCGTTGTCGACGTCCCGTGGGA                         GATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGTTCTGAAGC
genomic: TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctg ... gtccctgcagGATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
EST: gi|8576974|gb|BE129611.1|BE129611
EST:     TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGA                         GATGTTTGGCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGTTCTGAAGC
genomic: TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctg ... gtccctgcagGATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
EST: gi|12047139|gb|BF729278.1|BF729278
EST:     TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGA                         GATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGTTCTGAAGC
genomic: TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctg ... gtccctgcagGATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
EST: gi|71771347|gb|DR969284.1|DR969284
EST:     TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGA                         GATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
genomic: TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctg ... gtccctgcagGATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
EST: gi|71760459|gb|DR958396.1|DR958396
EST:     TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGA                         GATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
genomic: TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctg ... gtccctgcagGATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
EST: gi|6056635|gb|AW091040.1|AW091040
EST:     TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGA                         GATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGTTCTGAAGC
genomic: TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctg ... gtccctgcagGATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
EST: gi|91054479|gb|EB164897.1|EB164897
EST:     TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGA                         GATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
genomic: TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctg ... gtccctgcagGATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
EST: gi|78544346|gb|DV621844.1|DV621844
EST:     TACGAAGATAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGA                         GATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
genomic: TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctg ... gtccctgcagGATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
EST: gi|14203793|gb|BG837470.1|BG837470
EST:     TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGRCCCGTGGGA                         GATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGTTCTGAAGC
genomic: TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctg ... gtccctgcagGATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
EST: gi|18180907|gb|BM382117.1|BM382117
EST:     TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGA                         GATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
genomic: TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctg ... gtccctgcagGATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
EST: gi|18181502|gb|BM382712.1|BM382712
EST:     TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGA                         GATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
genomic: TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctg ... gtccctgcagGATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
EST: gi|89755014|gb|DY685590.1|DY685590
EST:     TACGAAGACAAGGATGGGGACTGGATGCTCGTTGGCGACGTCCCGTGGGA                         GATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
genomic: TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctg ... gtccctgcagGATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
EST: gi|76020197|gb|DT947367.1|DT947367
EST:     TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGA                         GATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
genomic: TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctg ... gtccctgcagGATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
EST: gi|78108965|gb|DV527382.1|DV527382
EST:     TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGA                         GATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
genomic: TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctg ... gtccctgcagGATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
EST: gi|78119357|gb|DV537741.1|DV537741
EST:     TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGA                         GATGTTTGTCGAGTCATGCAGGCGTTTGAGGATCATGAAGAGCTTTGAAGC
genomic: TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctg ... gtccctgcagGATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
EST: gi|76285970|gb|DV025538.1|DV025538
EST:     TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGA                         GATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
genomic: TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctg ... gtccctgcagGATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
EST: gi|78180321|gb|DV550694.1|DV550694
EST:     TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGA                         GATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGTTCTGAAGC
genomic: TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctg ... gtccctgcagGATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
EST: gi|18181098|gb|BM382308.1|BM382308
EST:     TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGA                         GATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC
genomic: TACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctg ... gtccctgcagGATGTTTGTCGAGTCATGCAGGCGTCTGAGGATCATGAAGAGCTCTGAAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGAGGGAAAACTAGTTGATCCGGTCAGCGGTGCTGATGTGGTCACTACTTACGAAGACAAGGATGGCGACTGGATGCTCGTTGGCGACGTCCCGTGGGAgtatgttctgcattctagtgtgccatcatctaggatttgatcaggcaaatgttcaggcttcagcttcttatatgctgccttgttgattgttgtccctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG