1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaacgagtatcttcttgactgctgcatactattattgttgagccccataatttatcttcaataaatattgctattatggatttatcctccgaa...
species | Zea mays |
transcript | GRMZM2G158766_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGGEST: gi|211059854|gb|FL039118.1|FL039118
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|60338388|gb|DN205361.1|DN205361
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|211053906|gb|FL039090.1|FL039090
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGGEST: gi|211053896|gb|FL039080.1|FL039080
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGGEST: gi|3191859|gb|AI001305.1|AI001305
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTNGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|211059857|gb|FL039121.1|FL039121
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGGEST: gi|60400305|gb|DN233112.1|DN233112
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|211014719|gb|FL072114.1|FL072114
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACWACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|211062802|gb|FL039127.1|FL039127
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCACAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|211210960|gb|FL000155.1|FL000155
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGGEST: gi|32933498|gb|CF038310.1|CF038310
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|211014717|gb|FL072112.1|FL072112
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|37383346|gb|CF628681.1|CF628681
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|213171215|gb|FM188433.1|FM188433
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|33100569|gb|CF060529.1|CF060529
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|211017494|gb|FL072120.1|FL072120
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|6653858|gb|AW267263.1|AW267263
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACANCA AGACGACAGTTAANCAAATCGAGGACGCGTTCAAAGAATTTACTNCAAGGGEST: gi|32856242|gb|CD995923.1|CD995923
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAGGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|211056847|gb|FL039100.1|FL039100
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGGEST: gi|211210961|gb|FL000156.1|FL000156
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGGEST: gi|211053898|gb|FL039082.1|FL039082
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAWAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|211014716|gb|FL072111.1|FL072111
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|14245602|gb|BG874184.1|BG874184
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|211059846|gb|FL039110.1|FL039110
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|211014721|gb|FL072116.1|FL072116
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|84977205|gb|DW475627.1|DW475627
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGGEST: gi|211014722|gb|FL072117.1|FL072117
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|78090061|gb|DV518435.1|DV518435
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|32916548|gb|CF021360.1|CF021360
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGGCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|211053909|gb|FL039093.1|FL039093
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGTACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|40335964|gb|CK370034.1|CK370034
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|211117287|gb|FL451396.1|FL451396
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|67015900|gb|CO444649.1|CO444649
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|116813511|gb|EC855962.1|EC855962
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|211062803|gb|FL039128.1|FL039128
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGGEST: gi|211056851|gb|FL039104.1|FL039104
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGGEST: gi|211017495|gb|FL072121.1|FL072121
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGGEST: gi|32865044|gb|CF004726.1|CF004726
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGCCAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|16927531|gb|BM080600.1|BM080600
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGEST: gi|211056854|gb|FL039107.1|FL039107
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGGEST: gi|9824967|gb|BE575064.1|BE575064
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGGEST: gi|37387839|gb|CF631121.1|CF631121
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACACCGTCACTGGCTTCTTGATGGCCGGCGTTGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaacgagtatcttcttgactgctgcatactattattgttgagccccataatttatcttcaataaatattgctattatggatttatcctccgaa
- - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC