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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAATTCCTTTTGGGTCAACACCCAAGAATAATGATGGCACATCTGATGCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtaccacttgccctctgtttcagatgactagccttgtgccattgtattgcaacggatatgatataggcaatgcatgctggaaactctagagacaat...

Basic information

species Zea mays
transcript GRMZM2G158662_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158662_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g22330.1 (Oryza sativa), 5'ss of exon 3
AGCAATTCCTTTTGGGTCAACACCCAAGAATAATGATGGCACATCTGATGCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtaccacttgccctctgtttcagatgactagccttgtgccattgtattgcaacggatatgatat-aggcaatgcatgctggaaactctagagacaat--
||||||||| |  || |||||||||||||||  ||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||||||   |||    |  | |||  ||         |   ||| || ||||   |   ||| |||| | |   ||     |  |     |||| | |    
AGCAATTCCATCGGGATCAACACCCAAGAATGGTGATGGCACATCTGATGCTGGTACAAATTGGTTAATGTTCGAATTGCTATGGAGAGATTTCTTCAGgtatgtattgctta---tgagattcccatagtcccatgtaatccaatgaattgtgtcttgtataatatgaagttctgttccttttaccaagtagaaaaatctg

upper sequence: GRMZM2G158662_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA02G02110.1 (Glycine max), 5'ss of exon 3
AGCAATTCCTTTTGGGTCAACACCCAAGA--ATAATGATGGCACATCTGATGCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtaccacttgccctctgtttcaga--tgact--agccttgtgccattgtattgcaacggatatgatata-ggcaatgc--atgctggaaactctagagacaat
  || |||   || |  ||||    | ||   |  | ||||| | ||     |||||||||||||||| |||||||||||||| ||||| || ||||| |||||  ||    |||  | |   ||  |   |  ||  |  |||  |      | || |   | ||  |||||| || ||||   ||| || |     | |       
-TCATTTCTGCTTCGTCCAACCGGAATGATGGTGGTAATGGCTCGTCCAGAACTGGAACAAATTGGTTGATGTTTGAGTTGCTATGGAGGGACTTCTTTAGgtaactattttttgtgcacatcttttggctttgcttgaaacttcagtgtacatttttctttgcatgagatatatggaaatggcaatggtgcaccacttgg-------

upper sequence: GRMZM2G158662_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA10G02240.2 (Glycine max), 5'ss of exon 2
AGCAATTCCTTTTGGGTCAACACCCAAGA--ATAATGATGGCACATCTGATGCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtaccacttgccctctgtttcagatgactagccttgtgccattgtat------tgcaacggatatgatataggcaatgcatgctggaaactctagagacaat
  || |||   || ||   |||   | ||   |  | ||||| | ||       || ||||||||||| |||||||||||||| ||||| || ||||| |||||  ||    |||  | ||  ||     |  | || | |  |    ||||      | |   | ||  |||||| | ||   |||         ||| || ||  
-CCATTTCTGCTTCGGCGGACAAGAACGATGGTGGTAATGGCTCGTCCAGAAACGGTACAAATTGGTTGATGTTTGAGTTGCTATGGAGGGACTTCTTTAGgtaaatattttttgtgcacttgttttttggctttgcttggaacttcagtatacatttttctttgcatgagatatatggaa---atggcaatggtcctatag-ca--

upper sequence: GRMZM2G158662_T01 (Zea mays), 5'ss of exon 3
lower sequence: AT2G47590.1 (Arabidopsis thaliana), 5'ss of exon 3
AGCAATTCCTTTTGGGTCAACACCCAAGAATAATGATGGCACATCTGATGCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtaccacttgccctctgtttcagatgactagccttgtgccatt-gtattgcaacggatatgatataggcaatgcatgctggaaactctagagacaat
                                   | ||  |    ||| | |||   || |||||||||| ||||||||| ||||| |||||||||||||  |  |    |  | |   || |     | |||   |||   ||| |||||    | |||    | |  |  |||  || |  ||   || |  |||  
---------------------------------GAACGGACCGGGAGATACAGGACTCAACTGGTTAATGTATGAGTTGCTATGGAGGGATTTCTTCAGgtgagctcttactttcttaacttgccccctagtagaaatgtagaatttgtattttgtctgattctctctttg--atgtgtgtttaaa---cttggaacag-

upper sequence: GRMZM2G158662_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv07s0005g00590.t01 (Vitis vinifera), 5'ss of exon 3
AGCAATTCCTTTTGGGTCAACACCCAAGAATAATGA---TGGCACATCTGATGCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgt------accacttgccctctgtttcag-atgactagcc-ttgtgccattgtattgcaacggatatgatataggcaatgcatgctggaaactctag--agacaat------------------------------------------------------
    | |  || ||  |||||| ||||  ||  ||    ||||  ||||||  | ||||  || ||||| |||||||| ||| ||||||| ||||||||||||||  |      | ||     | | |||  ||  |  |||||   ||     |||  |     |   || |  | |   |  ||| | || || || |     | | |||                                                      
---GACTATTTCTGCCTCAACATCCAAAGATGGTGGCAGTGGCCAATCTGACACCGGAATGAACTGGTTGATGTTTGAATTGATGTGGAGGGATTTCTTCAGgtaacttgaaaaatcatagagcttgtgtcacactagaactagtagttcctgtattaaaggtttatttatctt-tctttcccctgctttcttgatacacatactacataatttgactttcaattggtactgtttcactaatgtcttgtgccactgtccatttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40336651|gb|CK370721.1|CK370721
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|76914107|gb|DV165407.1|DV165407
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|211004228|gb|FL439467.1|FL439467
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|32921447|gb|CF026259.1|CF026259
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTAC
EST: gi|74240099|gb|DT648013.1|DT648013
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|32923148|gb|CF027960.1|CF027960
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTA
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTA
EST: gi|166556876|gb|EG268032.1|EG268032
EST:     AGAGATTTCTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: AGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|32920320|gb|CF025132.1|CF025132
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTA
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTA
EST: gi|37393753|gb|CF634142.1|CF634142
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|32922007|gb|CF026819.1|CF026819
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGT
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGT
EST: gi|32920266|gb|CF025078.1|CF025078
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACANAGAAGT
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGT
EST: gi|32925031|gb|CF029843.1|CF029843
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGT
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGT
EST: gi|71435910|gb|DR816960.1|DR816960
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|94475869|gb|EB704827.1|EB704827
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|149069800|gb|EE158186.2|EE158186
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|32922306|gb|CF027118.1|CF027118
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTA
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTA
EST: gi|149099430|gb|EE185469.2|EE185469
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|94479086|gb|EB708044.1|EB708044
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTTTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|110195779|gb|EC877676.1|EC877676
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTTTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|78116091|gb|DV534479.1|DV534479
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|37396211|gb|CF635393.1|CF635393
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|50334996|gb|CO530122.1|CO530122
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|32921224|gb|CF026036.1|CF026036
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGT
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGT
EST: gi|32926218|gb|CF031030.1|CF031030
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTAC
EST: gi|32923560|gb|CF028372.1|CF028372
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTA
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTA
EST: gi|71762343|gb|DR960280.1|DR960280
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|76908974|gb|DV163161.1|DV163161
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|32922206|gb|CF027018.1|CF027018
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTA
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTA
EST: gi|32921938|gb|CF026750.1|CF026750
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GCTCATCACAAAGAAGTA
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTA
EST: gi|86473550|gb|DY239920.1|DY239920
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTTTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|83278195|gb|DV942203.1|DV942203
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|149106207|gb|EE291900.2|EE291900
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|32922666|gb|CF027478.1|CF027478
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTA
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTA
EST: gi|32828358|gb|CD968036.1|CD968036
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTA
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTA
EST: gi|50334995|gb|CO530121.1|CO530121
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|32923395|gb|CF028207.1|CF028207
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGT
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGT
EST: gi|166556526|gb|EG173352.1|EG173352
EST:     GAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: GAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|32922653|gb|CF027465.1|CF027465
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTA
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTA
EST: gi|32922165|gb|CF026977.1|CF026977
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTA
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTA
EST: gi|71440273|gb|DR821323.1|DR821323
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|149094894|gb|EE180473.2|EE180473
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTTTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|71772788|gb|DR970713.1|DR970713
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|6194601|gb|AW146705.1|AW146705
EST:     GCTGGGACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: gi|32922371|gb|CF027183.1|CF027183
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTA
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTA
EST: gi|32921485|gb|CF026297.1|CF026297
EST:     GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG                         GTTCATCACAAAGAAGTA
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 93

AGCAATTCCTTTTGGGTCAACACCCAAGAATAATGATGGCACATCTGATGCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACTGGCTGCACTCCCGCCCCAGCGCTTGCATGAACTTACTTAGACAAGCTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 305

AGCAATTCCTTTTGGGTCAACACCCAAGAATAATGATGGCACATCTGATGCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACTGGCTGCACTCCCGCCCCAGCGCTTGCATGAACTTACTTAGACAAGCTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 185

AGCAATTCCTTTTGGGTCAACACCCAAGAATAATGATGGCACATCTGATGCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACTGGCTGCACTCCCGCCCCAGCGCTTGCATGAACTTACTTAGACAAGCTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 197

AGCAATTCCTTTTGGGTCAACACCCAAGAATAATGATGGCACATCTGATGCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACTGGCTGCACTCCCGCCCCAGCGCTTGCATGAACTTACTTAGACAAGCTG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCAATTCCTTTTGGGTCAACACCCAAGAATAATGATGGCACATCTGATGCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtaccacttgccctctgtttcagatgactagccttgtgccattgtattgcaacggatatgatataggcaatgcatgctggaaactctagagacaat

- - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA